Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04161 ATGGCATCGGGCTTACTTACTCAGCTGCAATCTGTTCCTCATGATGGAAACCCAAGTCAATCAATGGGGACTGAAGGAGATGAAGGTTTAGAGTGTAGCCATGAGTCGGCTAATGCTCTCCACTTTCCATCCACTAGAGAGATGACCAGTGTTGACTTGCAAACTGTTGGGGGAGAATGTAGTCTTGGGACGGATCACAGTCCGAGTCAAGCATCCTGTTCAGAGCCATATTACATATCAATTGATGATGCTACTACATGCATCCCAGAAATGACTCATCACGAAGCATGTTCTTCTGAACTCAATGAACAATTCTCACATGAACCTGGAAATCCCATAAATGAGGATTGCCAGTTTAATTTACATTCCTTGCCCAATATTTCATCAATAGACTTAGGGAAGGACTCCTCCCAGTTGCAAAGAGATTATATGGAATCTACAGATCCTAGTGGAATACGTGACTCGGCGAATGTTTCAATGCCCATGGAAACTACATCTACGGATGCTGCCAAACCAGATCATATGCTGATATCTGATGATGAATGTTGCAGAGCCCTATTTCCAGAGGCAAATAATGATAGATGTTTTATCCCTGGAGATTATATTAAAGATGTTGATACTGTTGAATTTTCTGGTCACCCCCAATTTGTTTGTCAATCATGTCATTTTCAGATTTCCGAAAATTGTGGAACCTCAAATCTGCCATTAACTTGTCCTCAGTGTTCTAATAATTTTAAAGGGATGGCATACTCCCAATCTACTCGACCAGTACATTCCGCTGAGCCTGAGGATCAGAAGTTTGTTTCGACAGCACCTGATAACTTCACTTATGCCATTGACATGCCCAGTTCTCATTGTATTGATGCTACAGATAGTGCAGTAATGCGAGATGTTAAGCAAACTTGTTTTCCAACAGATGAAAGGCCAAACATGCACACAGAAAAGGAGGGCAAGGGAGCACTATGCTATGAACCTCCCCGTTTTCCGAGCATGGATATTCCTTTCTTGAGCTGTGATCTTGTGCAATCTGGGGGTGATATGCAGCAAGAATTTAGTCCTCTGGGTATCCGCCAGTTTATGATGTCGTCTATGAACTGTCTGACTCCTTCAAGGTTGTGGGACTCGCCTTCTCGTGATGATAGTCCAGAAGCATTATTGAAAAGTGCAGCTAAAACTTTTACGGGTACACCGTCAATATTAAAAAAACGACGCCGAGATTTGTTATCCCCACTTTCAGATAAACGAATTGGCAAGAAACTTGAGACTGACATGACATCATCTCTGTCCAAAGCCTTTTCTAGTTTGGAAGCAGATATACTCTCTCCATCTTCATTGCAAAAGAAAAACTCCGAGGCTCCTGTTTTTGACGACGATAAAGAAAATTGTGGACAAGCTGATAAAGGTAAACAAGTAGAGGAGATAATTAAATCTGCAGTTTTGGAAGAAAAGATGTCCCAAAGAGATGCTCTTGACAGTAATTCTCCTAGTAAGGTTAAGCAGCAACCTCTTGATGTTGATTCTAAAATGAAGATTGATGTTACTACTGCTGTTGAGATTGTGCAACAATCTTCTGCAGTTTTGTCTGAACATGATAGGAACGACCTTTCATTATATTCATCTGATGAAGTTGGTGTTAGAGACAGAGTTCTAGGTTCTAGTGTTATATCTCCCAGAAACATGAACAATAGGAGCTCGGAAATAGCTCCAAACCAGAGCATTCCTTCAAAAATACCTTCTGAGAATCAACGCTCAAGGTTTAGCTCTCCTTGTGTTCGTGCAAAGGAACATGAAAATCTTACAGTTTCTGTTGCTCGTGCAAAAGCTCCAGAGGAGAATTCGGGGGATCAAAGTAAAAACGATGGAGAATTTGGAACGTGTAACATATTTGGCGGAACACCTTTCAGGAAAGGTTTTGAATCACCTTCTGCATGGAAATCTCCTTGGCTCAGGAATACTTTTCTCTGTAGCCCAAATGCTGAAATTACAATTGAGGATTTTGGATTTTTCAAAAGCCCGGGAGGTGATAGAAGCTACGACGCTATTGGGTTGTTAAAAGAAGTTGGTGAACAAACTGCTGCTACATATGAAAATGCACAGGAGATTTTGAATAATGATACTCCTAAAGCATTACCTAGAGGCGGCGGCACACCAGGAGATGATAAGAATATCGATGACGAAAATGATGATTCTAACAATGCAAACAATTCTAAATTGACTTCTAATGCTTTGGTTGAGCGCCGCGTACTCGACTTTAGTGAATGTGGATCACCTGATAAGAGTGATAGCAGCAAATCCTCAGCAAATCCTCAGCCATGA 2316 0.4123 MASGLLTQLQSVPHDGNPSQSMGTEGDEGLECSHESANALHFPSTREMTSVDLQTVGGECSLGTDHSPSQASCSEPYYISIDDATTCIPEMTHHEACSSELNEQFSHEPGNPINEDCQFNLHSLPNISSIDLGKDSSQLQRDYMESTDPSGIRDSANVSMPMETTSTDAAKPDHMLISDDECCRALFPEANNDRCFIPGDYIKDVDTVEFSGHPQFVCQSCHFQISENCGTSNLPLTCPQCSNNFKGMAYSQSTRPVHSAEPEDQKFVSTAPDNFTYAIDMPSSHCIDATDSAVMRDVKQTCFPTDERPNMHTEKEGKGALCYEPPRFPSMDIPFLSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCLTPSRLWDSPSRDDSPEALLKSAAKTFTGTPSILKKRRRDLLSPLSDKRIGKKLETDMTSSLSKAFSSLEADILSPSSLQKKNSEAPVFDDDKENCGQADKGKQVEEIIKSAVLEEKMSQRDALDSNSPSKVKQQPLDVDSKMKIDVTTAVEIVQQSSAVLSEHDRNDLSLYSSDEVGVRDRVLGSSVISPRNMNNRSSEIAPNQSIPSKIPSENQRSRFSSPCVRAKEHENLTVSVARAKAPEENSGDQSKNDGEFGTCNIFGGTPFRKGFESPSAWKSPWLRNTFLCSPNAEITIEDFGFFKSPGGDRSYDAIGLLKEVGEQTAATYENAQEILNNDTPKALPRGGGTPGDDKNIDDENDDSNNANNSKLTSNALVERRVLDFSECGSPDKSDSSKSSANPQP 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04161 771 MobiDBLite consensus disorder prediction 555 583 - -
Vifa3g04161 771 MobiDBLite consensus disorder prediction 756 771 - -
Vifa3g04161 771 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g04161 771 MobiDBLite consensus disorder prediction 700 771 - -
Vifa3g04161 771 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04161 Vifa-Chr3 1226717682 1226720490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04161 77 520 MYB Transcription Factor Family AT5G11510 27.253 1.48e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04161 - K09420 aprc:113848458 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04161 3 1226717682 1226720490 Vifa3g04161 3 1226717682 1226720490 ECH