Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04149 ATGGACAAGGTTGTTGGAGGAAAGTACAGTATTGGTCGCAAAATTGGAAGTGGATCATTCGGTGAAATTTATATTGGGGCTCATATTGTGACTTCTGAGCTTGTGGCCATTAAGAAGGAGAACAAGAAAACTAAACAACCACAGCTACTATATGAAGCAAAGTTGTATAATATTCTGAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTGTTGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGACCGAGTCTTGAAGATCTTCTTTATTATTGTGAGGGGAAGTTTTCGCTGAAATCGGTTTTGATGTTGGCTGATCAGATGCTTACAAGGATAGAGTATTTACATTCCAAGGGACTTCTGCATAGAGATATCAAGCCAGATAACTTTCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTTTGTATGATTGATTTCGGACTTTCAAAAGGATATAGAGATCCTATCAGTTACAAGCACATTCCATACAGGGAGAACAAAAACTTAACGGGAACTGCACGTTACGCAAGTTGCAATACTCATAAAGGAATTGAACAAAGTCGCAGAGATGATTTGGAGTCTCTTGGTTATGTTCTTTTGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTACAGGCTACCACGAGAACACAAAAATATGAAAAGATTTGTAAAACCAAGTTATCAATTCGCACCGAGGTACTTTGCAAGTCATATCCTGTTGAATTTGCTTCTTACTTTCATTATTGTCGCTCCTTGACGTTTGATCAACGACCAGATTATGGATATTTGAGACGCCTCTTTCGTGAATTGTTCAATTCTAAAGGATATGATGCTGACTATTTATTCGACTGGACGATTTTAAAATATCAGGAGATACAACAAATAAAGGAACAAAATGAATCCATTGTTCCAGTTGCTTTACCTACCACTCTTGAACCTGTGGATGCAGACGAGAATATAGAAGTCAATAATTGTACTCAAACTTCTGTGGCAAAACCACCAATCTACTCCGATCGTCCACGTGTTTGTATGAACCTCAGGGTAGCTAATGTCGAAAGTCTTGATGATGAGATTGGAACGGAGAAACATAATGTGAATACTGGTTTACCTATTTCGACTGTCACGCCTATAGTTTCTACGGAAAATGTTCCAATGCCTGAAAGGACTGTAGAAGCCTCAAATCCGGACGGTGTGTTAGGAAGTAAATGTGGTGCTTCTGGTGATATTGTTTCTTCATTACGCCGAGTTTCATCCATCAATTAG 1281 0.388 MDKVVGGKYSIGRKIGSGSFGEIYIGAHIVTSELVAIKKENKKTKQPQLLYEAKLYNILKGGSGIPRMKWFGVDGDYNVLVLELMGPSLEDLLYYCEGKFSLKSVLMLADQMLTRIEYLHSKGLLHRDIKPDNFLMGLGKKANQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASCNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQATTRTQKYEKICKTKLSIRTEVLCKSYPVEFASYFHYCRSLTFDQRPDYGYLRRLFRELFNSKGYDADYLFDWTILKYQEIQQIKEQNESIVPVALPTTLEPVDADENIEVNNCTQTSVAKPPIYSDRPRVCMNLRVANVESLDDEIGTEKHNVNTGLPISTVTPIVSTENVPMPERTVEASNPDGVLGSKCGASGDIVSSLRRVSSIN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04149 426 PANTHER CASEIN KINASE-RELATED 7 315 - -
Vifa3g04149 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04149 426 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vifa3g04149 426 Gene3D Transferase(Phosphotransferase) domain 1 1 330 - -
Vifa3g04149 426 FunFam CK1 family protein kinase 1 323 - -
Vifa3g04149 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa3g04149 426 Pfam Protein kinase domain 9 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04149 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 39 IPR017441 GO:0005524
Vifa3g04149 426 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04149 Vifa-Chr3 1223975869 1223978896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04149 8 213 EF-hand Containing Proteins AT2G17890 27.700 2.06e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa3g04149 Pkinase 8.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04149 K08960 - gmx:100782913 587.8