Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04147 ATGAGCATTGGTTTTATAGCTTTTGTTGCTTTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGTGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTAAATATTTTATAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGGATCCACGCTTTACCCTCGAAAGAAGGGAAACTTGTCGAATATCGAGGTAGTGTTGCATCGTCATATGGATGGGGAAACCACTGAATATGAAGAATTAAGAGCTGAAAACGGTGTTTTTTCTCTCTCAAGGAGAGTTGAGGCTCAAGAGAGTTTGTCGGTAGCCATAGAGGCTCACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACTAAAGAAAATAATCAAGCATGCAAAAAACTTTTAAAACTCATGGGAGTGCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGGTGCTCTTTGCAAAGTTGGAAAAGCAACTTCACATCTGCTCCTCTACCGGAGAGGATAG 858 0.4324 MSIGFIAFVALRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLGSTLYPRKKGNLSNIEVVLHRHMDGETTEYEELRAENGVFSLSRRVEAQESLSVAIEAHNKEDIEKFSKRTVKVTKENNQACKKLLKLMGVPVVEAPSEAEAQCGALCKVGKATSHLLLYRRG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04147 285 Gene3D - 183 282 - -
Vifa3g04147 285 ProSitePatterns XPG protein signature 2. 252 266 IPR019974 GO:0016788
Vifa3g04147 285 Gene3D Tetratricopeptide repeat domain 7 178 IPR011990 GO:0005515
Vifa3g04147 285 SUPERFAMILY PIN domain-like 202 275 IPR029060 -
Vifa3g04147 285 Pfam Sel1 repeat 68 102 IPR006597 -
Vifa3g04147 285 Pfam Sel1 repeat 32 64 IPR006597 -
Vifa3g04147 285 Pfam Sel1 repeat 12 29 IPR006597 -
Vifa3g04147 285 Pfam Sel1 repeat 107 138 IPR006597 -
Vifa3g04147 285 SUPERFAMILY HCP-like 86 165 - -
Vifa3g04147 285 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 10 167 IPR044623 GO:0030433
Vifa3g04147 285 SMART sel1 67 103 IPR006597 -
Vifa3g04147 285 SMART sel1 104 139 IPR006597 -
Vifa3g04147 285 SMART sel1 1 30 IPR006597 -
Vifa3g04147 285 SMART sel1 31 66 IPR006597 -
Vifa3g04147 285 SUPERFAMILY HCP-like 10 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04147 Vifa-Chr3 1223483109 1223484928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04147 194 274 Core DNA Replication Machinery Family AT5G26680 65.432 3.05e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04147 K14026 - psat:127101456 315.849