Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04145 ATGTTCCATTCTCACCGTCTCAAAGCTGTTGTCTACCTCAACCATCTTTCTTCAACTCCAAAATCTCACCACCTTCTTCACTCTCTCAATCCCTTCTCCACCACTTCAGATTCCTTCACCCTATCCTACTTCACCAACAACTGTGGCTTATCTCCACAAGACGCTCTCAAAGCCTCAAAACGACTCCGTCTCACTTTCACCACACCCGAAAAACCCAACTCCGTTATCGCCTTCTTCAAAACCCATGGTTTCTCCATTCCCCAAATCCAATCCATCATTCTCAAGAACCCCCAACTCATCCTCTCCAACCCCACCAAAACCATTCTCCCTAAGTTTCAATTTTTAGCCTCCAAAGGCGCTTCTCCCTCCGACATAGTCGCCGCCGTCACCAGAAGCTCTCGTTTCCTCCGTGTAAGCCTCGAGAAACATATTATCCCTGCTTTTCAGTTGGTGGCATTGGCAACAGCAGCAAAAGCAAAATTACTTCTTCGTGAGCTAAAAACCGTTAAAGCGGATTTAGCATTTGCTAAATTGCGCTGTGCTCAACTTGAAGAAGAAAATAAATTACTCAGGGAACGAGAAGGAAGCGATAAGGGACTTATCCGTGATGATGATGATCTGGTTGGTTTGGAAAACTCCTTCATTACAAATATTCGACATTGTATTAACATCACACAATCCAATGTTGATTCAGATTATGATGCTAAACCCAGCTTTACACAGATCTTGGTAATCTCATCTATTGGGTTGATATTTTTCATAGCATTGCGTTATCATCTCAAAAAGATTCGAGATCAAAAGATCATTCCGCGTTTAAGATTATCGCGTGCAGGTCACCCCCCAAAGCTTGAAAGATTCTCTCATTACGTATCTAGGCAAATGGGGTTCAAGGATAGGAGAATCGGTCCTGATATATGTAGATTGGCTTCTGAATACATAAGCAAATATGAAGGGTTTGAAGATGATATATATGCCTATTTTGAGAATGAACCAGATGCTGATTCACTTTATGTCAAGTTGGTGGAAGAGTTTGAGAGATGCATTCTTAGTTACTTTGGATTTCATTGGAACCATTGTGACATATTGATAAGTCAGGTTTTGAGCTCGGACATTTCTGAGCCAAAAAAGAAGCTAAAGAACATAGTTATGGCTGCTACTAGGGATCAAAGGTTCGAGAGAGTTGCCAAGAGTCTGAAGGTGGCTAGTGTTTTTAATACATTAGTGGAAGAGATGAAAGCGATGGGTATTGCAGTAAACGATGACTCTCATCATGAAATCGTCAAAATAAACAGTTATAAACGATGA 1305 0.413 MFHSHRLKAVVYLNHLSSTPKSHHLLHSLNPFSTTSDSFTLSYFTNNCGLSPQDALKASKRLRLTFTTPEKPNSVIAFFKTHGFSIPQIQSIILKNPQLILSNPTKTILPKFQFLASKGASPSDIVAAVTRSSRFLRVSLEKHIIPAFQLVALATAAKAKLLLRELKTVKADLAFAKLRCAQLEEENKLLREREGSDKGLIRDDDDLVGLENSFITNIRHCINITQSNVDSDYDAKPSFTQILVISSIGLIFFIALRYHLKKIRDQKIIPRLRLSRAGHPPKLERFSHYVSRQMGFKDRRIGPDICRLASEYISKYEGFEDDIYAYFENEPDADSLYVKLVEEFERCILSYFGFHWNHCDILISQVLSSDISEPKKKLKNIVMAATRDQRFERVAKSLKVASVFNTLVEEMKAMGIAVNDDSHHEIVKINSYKR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04145 434 Pfam mTERF 77 152 IPR003690 GO:0003690|GO:0006355
Vifa3g04145 434 Coils Coil 166 193 - -
Vifa3g04145 434 Gene3D Transcription termination factor 3, mitochondrial 47 202 IPR038538 -
Vifa3g04145 434 PANTHER UNCHARACTERIZED 231 424 IPR044802 -
Vifa3g04145 434 SMART mt_12 126 158 IPR003690 GO:0003690|GO:0006355
Vifa3g04145 434 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04145 Vifa-Chr3 1223054653 1223056979 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa3g04145 mTERF 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04145 - - gmx:100794775 298.13