Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04142 ATGGCCAAAATCGCGTTAGGAACAGCCCAAGAAGCCACTCAACCTGATTGCATCCAGGCTCTCGTTGTTGAATTCATTGCCACCTTTCTCTTTGTTTTTGCTGGTGTTGGTTCTGCAATCACTGCTGATAAACTTAAAGGAGATGCGTTAGTGGGATTGTTTTTTGTGGCTATAACTCATGCTCTTGTGGTGGCTGTGATGATTTCCGCCGCTCACATTTCCGGTGGCCATTTGAATCCCGCCGTGACATTAGGCCTTCTTGTCGGCGGCCACATCACCATCGTCCGTTCGGTTTTATATTGGATTGATCAATTGATAGCATCTGCAGCAGCTTGTTATCTTCTCCATTACCTAACTGGTGGATTGACAACTCCAGCTCACACACTTGCAAGTGGAATAGGGTACACACAAGGAGTAGTTTGGGAGATTGTGTTGACATTCTCTTTGTTGTTCACTGTTTATGCAACTATGGTTGATCCTAAGAAGGGAGCACTTGCTGGGCTTGGGCCAACTTTGGTTGGGTTTGTGGTAGGGGCTAATATCTTGGCTGGTGGGGCTTTTTCAGCTGGTTCGATGAACCCGGCGAGGTCTTTTGGGCCGGCTTTGGTTAGTGGAAATTGGACTGATCATTGGGTTTATTGGGTTGGGCCACTTATTGGTGGTGGGCTTGCTGGTTTTGTTTATGAGAATTTCTTTATTAATAGAGATCATGTTCCTCTTGTTGATGAAGAGAGCTACTAA 741 0.4588 MAKIALGTAQEATQPDCIQALVVEFIATFLFVFAGVGSAITADKLKGDALVGLFFVAITHALVVAVMISAAHISGGHLNPAVTLGLLVGGHITIVRSVLYWIDQLIASAAACYLLHYLTGGLTTPAHTLASGIGYTQGVVWEIVLTFSLLFTVYATMVDPKKGALAGLGPTLVGFVVGANILAGGAFSAGSMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFVYENFFINRDHVPLVDEESY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04142 246 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Vifa3g04142 246 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Vifa3g04142 246 Pfam Major intrinsic protein 13 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g04142 246 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g04142 246 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g04142 246 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g04142 246 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g04142 246 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g04142 246 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g04142 246 FunFam Probable aquaporin TIP1-1 2 244 - -
Vifa3g04142 246 PANTHER AQUAPORIN-8 4 235 IPR034294 -
Vifa3g04142 246 SUPERFAMILY Aquaporin-like 11 239 IPR023271 -
Vifa3g04142 246 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04142 Vifa-Chr3 1223027709 1223029027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04142 1 245 Major Intrinsic Protein MIP AT2G25810 76.735 3.81e-132 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04142 K09873 - gmx:100793258 420.624