Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04139 ATGAGAGTTTCATCACAAAACTCAGAAACCGAGAGCACCTCAAATTCATCACCATCAACAACAAATTCAAACTCAATTCAAGACCAAGATTCCAACAACAACATCAACAACCTTAAACGCAACCGCGACTCCAACAAACACCCCGTCTACCGAGGCGTTCGCATGAGAAATTGGGGAAAGTGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAGTCGCGGATTTGGCTCGGCACTTTCCCCACAGCCGAAATGGCAGCCAGAGCCCACGACGCTGCAGCTCTCTGCGTTAAAGGAAAATCCGCCATTCTCAATTTCCCTCACCTCGCAGATTCTCTTCCTAAACCCGCTTCTTTAGCCCCGCGCGACGTTCAGGCCGCGGCGGCTAAAGCAGCTCAAATGACCAACAATTTGGAATCACCGTCATCTTCTTTTTCACACTCGTCATCGTTGTCGTCATCTTCGCTGACGCTGACAACGATGTCATCGTCAGCATCGACAAGTCTGCTGATGAAGACAGCAACAAAACTGTCTTCATCAGCAGACTTATCAACAACCTCTGACGAACTCAGCGAGATAATCGAGCTACCTACTCTAGAAAACGGTTATGATGATGTTACAAAAGAAGAGTTTCTCTTTGTTGACTCACAATCACAAGACTTTACATGGATGTATCAACAACCAATAACATGGCTACAAACACCACAAGAAAACGGTTGTTGTGGTGACGCTGATTATAATGATGAATTTGGTAACAATAATGGTGTTGTAACTAATTTCGAGAGTTTTCTCTGGAACTACTAG 801 0.4569 MRVSSQNSETESTSNSSPSTTNSNSIQDQDSNNNINNLKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALCVKGKSAILNFPHLADSLPKPASLAPRDVQAAAAKAAQMTNNLESPSSSFSHSSSLSSSSLTLTTMSSSASTSLLMKTATKLSSSADLSTTSDELSEIIELPTLENGYDDVTKEEFLFVDSQSQDFTWMYQQPITWLQTPQENGCCGDADYNDEFGNNNGVVTNFESFLWNY 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04139 266 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Vifa3g04139 266 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Vifa3g04139 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 200 - -
Vifa3g04139 266 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Vifa3g04139 266 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vifa3g04139 266 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vifa3g04139 266 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Vifa3g04139 266 MobiDBLite consensus disorder prediction 1 39 - -
Vifa3g04139 266 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Vifa3g04139 266 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vifa3g04139 266 MobiDBLite consensus disorder prediction 1 51 - -
Vifa3g04139 266 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04139 Vifa-Chr3 1221504020 1221504820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04139 21 241 AP2-EREBP Transcription Factor Family AT5G11590 49.558 8.22e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g04139 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04139 K09286 - gmx:100305349 219.164