Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04134 ATGATAACGTGTCTCTTGTTCTTGTTTCTTCTTCTTCCACAACTATCATATTCCAACTCCCAGCCTTGTTTTTCTTCCTCATGTGGAAAGATCACAAACATAACTCATCCATTCAGACTAAAACAAGACCCAACCCACTGTGGCAACAGTAGATACGAGCTGGATTGTGTGAACAACGTTACTGTATTGAGTTTGTACGATGGTTATTATTTAGTAGAATCAATCAATTACAACAATTACACTATCCGAGTTGTTGACCCAAACATTCAACCCACCCATTGCTCCTCTCTCCCTCGCTTCTTCTTATACCGCCACAATTTCTCTTTTCAAGGTTCATGGCCGTTTATTTCCAAAGAAAGTAGTTCATACCAATACACCTTAGATCAATCGAATTACGTCTACGATGAACTAGATTTATCTAGCCCTGTAATTTTCATGAAGTGTACAAGTCCACCTAGTAAGATTGTTGATAAATATTATGCTGACACTTCTTCATGCTTGGGTCAACACACATACGCTATTGTTGGGGACCCAACCTATGAAATTTTGGAGCCTCAGTGCCGTGTCAAGCTTGTTACCCTCACATCCTTCTGGGGAACTTCATTAACGTACCAGCCCGACAGCAAAGAAAGTGTTATAGGTAACATTTCCAACATTGATATCCACAACGCACTTAGATATGGATTTGAAATTTCGTGGATGAAAGCCTCATGTCCTTGTGATTATTGCTTCTTCAACTACACCATCAACAACATTCAATGTGTCCAACTCACTTGTACTTTTGACTCTTGCGGATATTGGGCAGTTAAGGTCGGGCAAATGTTTGGTTACGTTGCAGGCATTGACGAAGGATTTCGAGAGCTGACAGGCCTGAAAAAGTTAAACATATATAAGCCAAGTATTAACCCATATAGAGCAGGAATAGTTACAGGAAAGTATATTTTGCCATACCTTGGACTTAGAATTATATTGGGCATCATACTTTTCTCTGTGTTGTTGATCTATACGTGTCGAAGAAGACACGAATCAATATATGAAAACATCGAAGATTTTCTACAAGCCATTAAGATGTTGAAGATAAAATCAAAAACTAATGGGCAAGATTTCATAAGTGAAGTTGCAACATTAGGAAGAATACACCATTCAAATGTGGTAAGACTCATTGGGTTTTGTGTTGAAGGATCAAAACGTGGTCTTGTGTATGAGTTTATGCCCAATGGATCTCTTGATAAATATATTTTCAACAAAGAGGAAGCTATATCTTTGACTTACAACCAAGTATATGAAATATCTTTGGGAGTAGCACGTGGGATTTCTTATCTTCATCAAGATTTTGGTCTTGCAAAGCTTTATCCTATTGACAATAGTATAGGCACTTTGACCGCAGCAAGAGGAACAATTGGGTATATGGCTCCTGAATTATTCTACAAAAATATCGGAGGAGTATCATATAAGGCTGACGTGTATAGCTTTGGAATGCTCTTGATTGAAATGACTAGTAGGAGAAGAAATTTGAATTCACATGTGGAGCATTCAAGTCAACTTTACTTTCCCTTTTGGATTTATGATCAATTGGTTAAAAATAGGGAGAGTGAAATGGAAGATACTATCATGGAAGAATTTAATGATGTTTTGAAGAAAATGTTCCTCGTTGCACTTTGGTGTATACAATTGAAACCTATTCATCGCCCTTCAATGAATAGAGTCGTAGAAATGCTTGAAAATGTTCTTGAAAATATTGAAATACCTCCAAAACCTATATTATATCCACATGAAACTATTCATGAGAATCTTGATACCAATTCAATGGAAACTGAATCAGATACTAGCTCTACCAGTTATGTTGAGGAAATCACAACCACTCCTTTGTTGAAGTTTTCTGCTTCATGA 1890 0.3709 MITCLLFLFLLLPQLSYSNSQPCFSSSCGKITNITHPFRLKQDPTHCGNSRYELDCVNNVTVLSLYDGYYLVESINYNNYTIRVVDPNIQPTHCSSLPRFFLYRHNFSFQGSWPFISKESSSYQYTLDQSNYVYDELDLSSPVIFMKCTSPPSKIVDKYYADTSSCLGQHTYAIVGDPTYEILEPQCRVKLVTLTSFWGTSLTYQPDSKESVIGNISNIDIHNALRYGFEISWMKASCPCDYCFFNYTINNIQCVQLTCTFDSCGYWAVKVGQMFGYVAGIDEGFRELTGLKKLNIYKPSINPYRAGIVTGKYILPYLGLRIILGIILFSVLLIYTCRRRHESIYENIEDFLQAIKMLKIKSKTNGQDFISEVATLGRIHHSNVVRLIGFCVEGSKRGLVYEFMPNGSLDKYIFNKEEAISLTYNQVYEISLGVARGISYLHQDFGLAKLYPIDNSIGTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLIEMTSRRRNLNSHVEHSSQLYFPFWIYDQLVKNRESEMEDTIMEEFNDVLKKMFLVALWCIQLKPIHRPSMNRVVEMLENVLENIEIPPKPILYPHETIHENLDTNSMETESDTSSTSYVEEITTTPLLKFSAS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04134 629 Gene3D Transferase(Phosphotransferase) domain 1 444 580 - -
Vifa3g04134 629 PANTHER RUST RESISTANCE KINASE LR10-RELATED 444 597 IPR045874 GO:0004672
Vifa3g04134 629 Pfam Wall-associated receptor kinase galacturonan-binding 23 86 IPR025287 GO:0030247
Vifa3g04134 629 Gene3D Transferase(Phosphotransferase) domain 1 335 443 - -
Vifa3g04134 629 ProSiteProfiles Protein kinase domain profile. 318 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04134 629 Pfam Protein tyrosine and serine/threonine kinase 353 443 IPR001245 GO:0004672|GO:0006468
Vifa3g04134 629 SUPERFAMILY Protein kinase-like (PK-like) 350 611 IPR011009 -
Vifa3g04134 629 Pfam Protein kinase domain 444 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04134 Vifa-Chr3 1218970804 1218982990 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04134 354 597 Receptor kinase-like Gene Family AT1G66980 43.682 7.01e-66 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04134 Pkinase 6.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04134 - - cam:101508554 792.727