Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04132 ATGGCAACCTGTTCAACTATGATGTTGGTCATAGTGATTTGCAGCACAGTTATATGGCGAGTTAATGGTTGTAGTGGAAGGGATTCCAGATGCGGACGTGACGGCCCGCCAATCCGATTTCCCTTCCGACTTAAAGACAATGAAACAGAAAATGGGTGCAGTTATAGAGGCTTTGATCTTACTTGTTCAGACACACACAAAACACTAATTGAGCTTTCTTCACATTCTGGTCCAGTTATTCTCCAAGTCATAAGCATAGATTATCCCCGGCAATCTCTAACCTTATCTGACCCAGAAAATTGCATTCCAGGACAGTTTTTAAAGCTCTTTCAATATCAAACCTCTCATTTCCAATCACAAACTTCTCCCTTTCAATTAGTGGAGTTTTACAATTTTACTTATAACTTCACTTTCCTCCACTGTAGCTCAATACCCTGCCCGGTTCAAGTTGTTGAGTCTTCAAAAACTCTCCTTGATTCGGGTCTGGATCCAATACTCTGGACCAAGACTTTAGATGTTATTTCTTCACCCGTCTACCCGCCAACAGATATGGAATATCAGAATTACTTGCAACTGACATGGTCAAAACCCAATTGTAGTAAGTGTGAAATACAAGGTAAGATGTGTAAACTGAAAAACAACGGAACAGAAGATGAGACTGAATGTTTTGACCGTCATCACAAACCTACTAAGAAAATAATTCTATATGTTACAGTTCCGTTCGTTGGTTTGATTCTGGTGACATTGATTCTCACAGCATGTTTACGTGTGTATAGCTATTTTAAAATGAAAAGTGAGGACGAGACTAGAATTGAAAAATTCTTAGAGGAATACAAGGCGCTCAATCCTGCTAGATTCTCGTATGCGGATATAAAGAGAGTTACGAATAATTTTAGAGAGAAGTTGGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGTAAACTATCAAATGAAATTCTCGTGGCTGTGAAGATGCTTAATAACACAGAGAGTGATGGAAAAGAATTCATTAATGAAGTGAAAGCTATGGGAAAAGTTCATCACATTAATGTGGTTCGCTTGCTTGGATTTTGTGCTGATGGGTGCTATCGTGCTCTTGTTTACAATTTCTTTTCTAACGGTTCGTTACAAAAATTTATAACTCGACCGGATGATAAGGACCATTTTCTTGGTTGGGAGAAACTACATCAAATTGCTATTGGCATAGCCAAGGGTATTGAGTATCTTCATATGAGTTGTGATCAACAAATTCTTCACTTTGATATTAATCCGCACAATGTGTTATTGGACGACAAGTTGCTTCCCAAAATTACAGATTTTGGTTTGGCTAAATTGTGTTCTAAAGATCAAAGCGTTGTTTCAGTAACTACTGCAAGAGGAACTTTGGGTTACATTGCACCAGAAGTATTTTCTAGAAACTTTGGAAATATATCGTATAAAGCAGACATATATAGTTATGTGATGTTACTATTAGAAATGATTGGAGGAAGAAAGAATATAAGTCAGTTGTCTGAAGAAAATTCTCAAGTTCTATATCCAGAATGGATTCACAATCTCTTTGAAGGGAAAGATATGCAAGTGAAAATTGAGGGAGTAGAGAATGATATAATATTAAAGAAACTTGCAATTATAGGACTTTGGTGCATTCAGTGGCACGCAATAAACCGTCCATCTATAAAACTTGTGCTTCGAATGTTAGAGGCTTTTGATGAAGAAAACTTGGTTGTGCCCCCAAACCCTATTAACTCAAATACTATCAAAGTTGCTGAAATTCCGACTAATTACTCAACCTTAGAGTTGGAATCTATACATGAATGA 1818 0.3729 MATCSTMMLVIVICSTVIWRVNGCSGRDSRCGRDGPPIRFPFRLKDNETENGCSYRGFDLTCSDTHKTLIELSSHSGPVILQVISIDYPRQSLTLSDPENCIPGQFLKLFQYQTSHFQSQTSPFQLVEFYNFTYNFTFLHCSSIPCPVQVVESSKTLLDSGLDPILWTKTLDVISSPVYPPTDMEYQNYLQLTWSKPNCSKCEIQGKMCKLKNNGTEDETECFDRHHKPTKKIILYVTVPFVGLILVTLILTACLRVYSYFKMKSEDETRIEKFLEEYKALNPARFSYADIKRVTNNFREKLGEGAHGAVFKGKLSNEILVAVKMLNNTESDGKEFINEVKAMGKVHHINVVRLLGFCADGCYRALVYNFFSNGSLQKFITRPDDKDHFLGWEKLHQIAIGIAKGIEYLHMSCDQQILHFDINPHNVLLDDKLLPKITDFGLAKLCSKDQSVVSVTTARGTLGYIAPEVFSRNFGNISYKADIYSYVMLLLEMIGGRKNISQLSEENSQVLYPEWIHNLFEGKDMQVKIEGVENDIILKKLAIIGLWCIQWHAINRPSIKLVLRMLEAFDEENLVVPPNPINSNTIKVAEIPTNYSTLELESIHE 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04132 605 Gene3D Phosphorylase Kinase; domain 1 268 370 - -
Vifa3g04132 605 FunFam PR5-like receptor kinase 371 578 - -
Vifa3g04132 605 Gene3D Transferase(Phosphotransferase) domain 1 371 575 - -
Vifa3g04132 605 Pfam Protein tyrosine and serine/threonine kinase 298 507 IPR001245 GO:0004672|GO:0006468
Vifa3g04132 605 Pfam Wall-associated receptor kinase galacturonan-binding 26 97 IPR025287 GO:0030247
Vifa3g04132 605 PANTHER RUST RESISTANCE KINASE LR10-RELATED 267 582 IPR045874 GO:0004672
Vifa3g04132 605 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Vifa3g04132 605 FunFam serine/threonine-protein kinase PBS1-like 263 370 - -
Vifa3g04132 605 SUPERFAMILY Protein kinase-like (PK-like) 277 567 IPR011009 -
Vifa3g04132 605 ProSiteProfiles Protein kinase domain profile. 296 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04132 Vifa-Chr3 1218911832 1218913721 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04132 53 593 Receptor kinase-like Gene Family AT1G66910 33.667 7.74e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04132 PK_Tyr_Ser-Thr 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04132 - - ahf:112783872 642.884