Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04129 ATGACAAGAAGTTTCAAAGATAAGTTGGGTGAAGGAGGATTTGGTGCTGTATATAAAGGAAAGCTTCGCAGTGGGCCATTTGCGGCCATAAAGATGTTGGGAAAATCAAAGGGTAATGGACAAGATTTTATCAATGAAGTCGCAACCATAGGACGAATACATCACACCAATGTGGTTCGACTTATTGGATTTTGTGTGGAAAGATCAAAACGAGCTCTTGTTTATGAATTCATGCCCAATGGTTCTCTTGATAAATATATTTCTTCTAGAGAGAATGCCATCACTCTAACTTATAAACAAATGTTTGACATATCTCTTGGAGTGGCTCGTGGGATTGCTTATTTACATCAAGGATGTGACATGCAAATTTTGCATTTTGATATCAAGCCACATAACATACTTTTGGACGACAACTTTGTCCCTAAAGTTTCAGACTTTGGTCTTGCGAAGCTTTATCCTAATGACATTAGCATTGTCACTTTGACTGCAGCAAGAGGTACAATTGGTTATATGGCTCCTGAATTATTTTATCAAAATATTGGAGGAGTTTCTTATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAAAGAAGAAATTTAAATCCACACGCAGATCGTTCAAGCCAACTTTTCTATCCTTTTTGGATTTACAATCAATTGGTTGAAGAAAAGGACATAGAAATGGATGAAATTACCAATGAAGAAATGACTAATGTGAAAAAGATGTTCATAACTTCACTATGGTGTATACAGTTAAAACCAAGTGACCGGCCTTCAATGGACAAAGTAATAGAGATGCTTGAAGGAGATATTGAAAATATTGAAATGCCTCCAAAACCTTCTCTATATCCAAATGAAGTTATTCAAGAAGATCTCGAAGAAACCTCTGATTAA 912 0.3575 MTRSFKDKLGEGGFGAVYKGKLRSGPFAAIKMLGKSKGNGQDFINEVATIGRIHHTNVVRLIGFCVERSKRALVYEFMPNGSLDKYISSRENAITLTYKQMFDISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLYPNDISIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASKRRNLNPHADRSSQLFYPFWIYNQLVEEKDIEMDEITNEEMTNVKKMFITSLWCIQLKPSDRPSMDKVIEMLEGDIENIEMPPKPSLYPNEVIQEDLEETSD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04129 303 ProSiteProfiles Protein kinase domain profile. 3 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04129 303 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vifa3g04129 303 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Vifa3g04129 303 SUPERFAMILY Protein kinase-like (PK-like) 5 274 IPR011009 -
Vifa3g04129 303 PIRSF ILK 4 283 - -
Vifa3g04129 303 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 291 IPR045874 GO:0004672
Vifa3g04129 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vifa3g04129 303 FunFam PR5-like receptor kinase 78 285 - -
Vifa3g04129 303 Gene3D Transferase(Phosphotransferase) domain 1 78 283 - -
Vifa3g04129 303 MobiDBLite consensus disorder prediction 283 303 - -
Vifa3g04129 303 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04129 303 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04129 Vifa-Chr3 1218433194 1218434105 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04129 1 303 Receptor kinase-like Gene Family AT5G38280 49.838 3.03e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04129 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04129 - - tpra:123893228 522.702