Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04127 ATGACAATATTACCAATAACATTGCTTTTGCCACTGCTTGTAATCCCATTCCCATCCATGGGATGTCCTTTCAATATATCTTGTACACATGATAACAACATGATTCTTCAACTACCTGCTATAAAACTACTCGTTAATCAAATTGACTACACAACGCGAGTATTAGAAGCAAGAGATCCTGATAATTGTCTTCCACGCCTCTTTCTTCACCACAATTTCTCTTCATTAATTTTTCCTTTTCGGATTACTTCGTGGTATTGGATTACTTCACCACAATACGATGAATTTACCAATATTAGTTTCTTTGATTGTTCTTCATTAGGACGACGTTATCTGAGCTCATACGGGCAGGACATGGTTTCTTGTCCAATTTATATGGCAGGATTTTACGAGGATATGGTTTTTACAAACCTTGTTTCCTGCACCAAACTGTCTCCACGAGATTCGCCACCCCTTATTCTTTCGGAAAATTGGGTATATAGGATACAAGAAAACTCAATCTCACTGTCATGGTCGGAAACAAATCTCGACACAAGATGTTTGGAATGTAAGCACAAATCAAAGAAGAAGATTATATTATGCTCTGCAGGTGTAATTATTGGCTCAATGGTACTTGTTCTTTTATTTGGTGGACTTTTTCAAATATATCGCTATTTGAAAATGAAAGACGAAGATCATGCAAGAATTGAAAACTTTTTAAAAGATTATAAAGCTTTAAAGCCAACTAGATTCTCTTATGCCGATATAAAGAGAATCACACACAAACATAAAGATAAGTTAGGTGAAGGGGCTCATGGAACTGTTTATAAAGGTAAGTTGTCGAATGAGATTCAGGTTGCCGTGAAGATACTTAGTAATTTAGAAGTAGATGGAAAGGACTTCATAAATGAAGTGGGAACCATGGGCAAAATCCACCACATCAATGTAGTTCGTTTGCTTGGCTTTTGTGCGGATGGATTTCATCGTGCTTTAGTCTATGACTATTTTTCAAATGGTTCGTTGGATAAATTCATTTCTCCACCAAACAACAAAGATAATTTTCTTGGATGGGATAAGTTACAACAAATTGCTTTAGGAATAGCAAATGGCATTGAGTATCTCCATCAAGGTTGTGATCAAACAATTCTACACTTTGACATAAATCCTCATAATGTCATGCTAGATGACAATTTCACTCCAAAGATTACAGATTTTGGTTTGGCTAAGATGTGTTCTAAAAATCAAAGTGTTGTATCTATGACTGCAGCTAAAGGAACATTAGGCTACATGGCACCTGAAGTTTTTTCTAGAAACTTTGGAAATGTCTCTTATAAGTCTGATATATATAGTTATGGCATGTTATTATTGGAGATGGTTGGGGGAAGAAAGAATACAAAAAAAACCGATGATGAAGAAAATATTCAGATTATGTATCCAGAATGGATCCACAATTTGCTTGAAGGAGGAGATGTACAAATCTCAGTTGATGAAGAGAGTGATTTTAAAATTGCAAGAAAAATAGCAATGGTAGGACTTTGGTGTATCCAATGGCACCCTTTACATCGTCCAACAATGAAAACTGTGGTGCAAATGCTTCAAGGAGAAGGGCACAAATTAAAAGTACCAAGCAATCCTTTCGGGCCTACAACTTCAACTAATACAAATGCTAATATTGTTGTAGAACGTATGAATTTGGAGCTGGATGTGATTCACGAATTAGATTAG 1704 0.3574 MTILPITLLLPLLVIPFPSMGCPFNISCTHDNNMILQLPAIKLLVNQIDYTTRVLEARDPDNCLPRLFLHHNFSSLIFPFRITSWYWITSPQYDEFTNISFFDCSSLGRRYLSSYGQDMVSCPIYMAGFYEDMVFTNLVSCTKLSPRDSPPLILSENWVYRIQENSISLSWSETNLDTRCLECKHKSKKKIILCSAGVIIGSMVLVLLFGGLFQIYRYLKMKDEDHARIENFLKDYKALKPTRFSYADIKRITHKHKDKLGEGAHGTVYKGKLSNEIQVAVKILSNLEVDGKDFINEVGTMGKIHHINVVRLLGFCADGFHRALVYDYFSNGSLDKFISPPNNKDNFLGWDKLQQIALGIANGIEYLHQGCDQTILHFDINPHNVMLDDNFTPKITDFGLAKMCSKNQSVVSMTAAKGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKKTDDEENIQIMYPEWIHNLLEGGDVQISVDEESDFKIARKIAMVGLWCIQWHPLHRPTMKTVVQMLQGEGHKLKVPSNPFGPTTSTNTNANIVVERMNLELDVIHELD 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04127 567 Gene3D Phosphorylase Kinase; domain 1 228 328 - -
Vifa3g04127 567 Pfam Protein kinase domain 256 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04127 567 SUPERFAMILY Protein kinase-like (PK-like) 239 525 IPR011009 -
Vifa3g04127 567 ProSiteProfiles Protein kinase domain profile. 254 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04127 567 FunFam serine/threonine-protein kinase PBS1-like 221 328 - -
Vifa3g04127 567 PANTHER RUST RESISTANCE KINASE LR10-RELATED 225 544 IPR045874 GO:0004672
Vifa3g04127 567 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Vifa3g04127 567 Gene3D Transferase(Phosphotransferase) domain 1 329 536 - -
Vifa3g04127 567 FunFam PR5-like receptor kinase 329 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04127 Vifa-Chr3 1218413934 1218416401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04127 189 538 Receptor kinase-like Gene Family AT1G66910 44.722 4.79e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04127 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04127 - - tpra:123893308 693.73