Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04126 ATGACAATATTACCAATAACATTGCTTTTGCCACTGCTTGTAATCCCATTCCCATCCATGGGATGTCCTTTCAATATATCTTGTACACATGATAACAACATGATTCTTCAACTACCTGCTATAAAACTACTCGTTAATCAAATTGACTACACAACGCGAGTATTAGAAGCAAGAGATCCTGATAATTGTCTTCCACGCCTCTTTCTTCACCACAATTTCTCTTCATTAATTTTTCCTTTTCGGATTACTTCGTGGTATTGGATTACTTCACCACAATACGATGAATTTACCAATATTAGTTTCTTTGATTGTTCTTCATTAGGACGACGTTATCTGAGCTCATACGGGCAGGACATGGTTTCTTGTCCAATTTATATGGCAGGATTTTACGAGGATATGGTTTTTACAAACCTTGTTTCCTGCACCAAACTGTCTCCACGAGATTCGCCACCCCTTATTCTTTCGGAAAATTGGGTATATAGGATACAAGAAAACTCAATCTCACTGTCATGGTCGGAAACAAATCTCGACACAAGATGTTTGGAATGTAAGCACAAATCAAAGAAGAAGATTATATTATGCTCTGCAGACGAAGATCATGCAAGAATTGAAAACTTTTTAAAAGATTATAAAGCTTTAAAGCCAACTAGATTCTCTTATGCCGATATAAAGAGAATCACACACAAACATAAAGATAAGTTAGGTGAAGGGGCTCATGGAACTGTTTATAAAGGTAAGTTGTCGAATGAGATTCAGGTTGCCGTGAAGATACTTAGTAATTTAGAAGTAGATGGAAAGGACTTCATAAATGAAGTGGGAACCATGGGCAAAATCCACCACATCAATGTAGTTCGTTTGCTTGGCTTTTGTGCGGATGGATTTCATCGTGCTTTAGTCTATGACTATTTTTCAAATGGTTCGTTGGATAAATTCATTTCTCCACCAAACAACAAAGATAATTTTCTTGGATGGGATAAGTTACAACAAATTGCTTTAGGAATAGCAAATGGCATTGAGTATCTCCATCAAGGTTGTGATCAAACAATTCTACACTTTGACATAAATCCTCATAATGTCATGCTAGATGACAATTTCACTCCAAAGATTACAGATTTTGGTTTGGCTAAGATGTGTTCTAAAAATCAAAGTGTTGTATCTATGACTGCAGCTAAAGGAACATTAGGCTACATGGCACCTGAAGTTTTTTCTAGAAACTTTGGAAATGTCTCTTATAAGTCTGATATATATAGTTATGGCATGTTATTATTGGAGATGGTTGGGGGAAGAAAGAATACAAAAAAAACCGATGATGAAGAAAATATTCAGATTATGTATCCAGAATGGATCCACAATTTGCTTGAAGGAGGAGATGTACAAATCTCAGTTGATGAAGAGAGTGATTTTAAAATTGCAAGAAAAATAGCAATGGTAGGACTTTGGTGTATCCAATGGCACCCTTTACATCGTCCAACAATGAAAACTGTGGTGCAAATGCTTCAAGGAGAAGGGCACAAATTAAAAGTACCAAGCAATCCTTTCGGGCCTACAACTTCAACTAATACAAATGCTAATATTGTTGTAGAACGTATGAATTTGGAGCTGGATGTGATTCACGAATTAGATTAG 1626 0.3604 MTILPITLLLPLLVIPFPSMGCPFNISCTHDNNMILQLPAIKLLVNQIDYTTRVLEARDPDNCLPRLFLHHNFSSLIFPFRITSWYWITSPQYDEFTNISFFDCSSLGRRYLSSYGQDMVSCPIYMAGFYEDMVFTNLVSCTKLSPRDSPPLILSENWVYRIQENSISLSWSETNLDTRCLECKHKSKKKIILCSADEDHARIENFLKDYKALKPTRFSYADIKRITHKHKDKLGEGAHGTVYKGKLSNEIQVAVKILSNLEVDGKDFINEVGTMGKIHHINVVRLLGFCADGFHRALVYDYFSNGSLDKFISPPNNKDNFLGWDKLQQIALGIANGIEYLHQGCDQTILHFDINPHNVMLDDNFTPKITDFGLAKMCSKNQSVVSMTAAKGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKKTDDEENIQIMYPEWIHNLLEGGDVQISVDEESDFKIARKIAMVGLWCIQWHPLHRPTMKTVVQMLQGEGHKLKVPSNPFGPTTSTNTNANIVVERMNLELDVIHELD 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04126 541 FunFam PR5-like receptor kinase 303 510 - -
Vifa3g04126 541 Pfam Protein kinase domain 230 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04126 541 SUPERFAMILY Protein kinase-like (PK-like) 213 499 IPR011009 -
Vifa3g04126 541 ProSiteProfiles Protein kinase domain profile. 228 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04126 541 PANTHER RUST RESISTANCE KINASE LR10-RELATED 199 518 IPR045874 GO:0004672
Vifa3g04126 541 FunFam serine/threonine-protein kinase PBS1-like 197 302 - -
Vifa3g04126 541 Gene3D Phosphorylase Kinase; domain 1 202 302 - -
Vifa3g04126 541 Gene3D Transferase(Phosphotransferase) domain 1 303 510 - -
Vifa3g04126 541 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04126 Vifa-Chr3 1218413934 1218416401 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04126 180 512 Receptor kinase-like Gene Family AT1G66910 46.334 1.28e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04126 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04126 - - tpra:123893308 606.675