Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04121 ATGTCTTGGAAAATGCTTGTGAACCTAACTGTTATAATAATGCTCCTATGGCAATACCCTCTTCCTTGCCTAACAGAAACAAATCACCAATGTCTCCTTTCATCTTGCGGCGATATACGAAACATCACCTACCCTTTTCGTCTACAAGGCGAACCCGAAAACTGTGGTGATCCAAACTATGAAATTTCCTGTGAGAACAATCAAACAATACTAAATCTAGACAATGGAAAATACTTTGTAGAAGCCATCAACTACAATAATTCCACAATAAGGATAACAGATTCAGGCTCGGTTGTTTCTCCTATTTACATGGATACTTCATCTTGTATGAAAGGACTGATCAACTCTTCCAACTATGCTGTTTTTGGTGACTTGAAAATCTCTGAGCTGGAAGATTCATGCAGCATACTTGTTATGGTCATGCTTTCAAATTTGCACAAACATGATAACAATGATAACAACCTTTCATATGTGAAAATCCATCAGCAACTTGTTTATGGTTTGGAGCTTTCTTGGAGTGAGATATTCTGCAAAGAATGTCAAGGTAGGGGATACTGTAAATTGAACAACAAAAATGAGGTCATTGGTTGTTCAAGAGGTAGACCTTGTAGTCGTAACGATATATCCTCTTTTAAATGTGCTTTAAAAGTGATAATCCATGCAGCCAAAGATGTTGTGACCGAAGGTCCTCATGAAATAGGCGGTATCATCGGAATAATTGTTGTTATAAGAATCATAGGAGGAATACTATTTATTCCAATGTACATGATATATAAATGGAGAAGGAGGCATTTATCCGCGTACGACTCGGTTGAGGAATTTCTCAAAACTCACAACAATCTCATGCCAATAAGATACTCTTACTCAGACATTAAGAAAATGACAAAAGGATTCAAGGATAAACTCGGCGAAGGTGGCTATGGTTCTGTTTACAAAGGACAGCTACGCAATGGTCACCTGGTAGCAATCAAGATGCTAGGAGGAAAATCGAGAGCAAATGGACAAGAGTTCATCAATGAAGTTGCTACCATTGGAACAATCCACCATGTTAATGTAGTTCACCTAATTGGTTTTTGTGTTGAAAAATCAAAAAGAGCACTTGTTTATGAGTTCATGCCGAATGGTTCTCTTGAAAAACACATTTTTTCGAGAGAACGAATGGGTTCTTTGAGTTGTGAGAAAATGTTTGATATAGCGCTTGGTGTAGCGCGTGGAATTGAATATCTACATAGAGGTTGTGACATGAGGATTTTACATTTTGATATAAAGCCTCATAACATTCTTCTTGATACGAATTTTACCCCAAAGGTTTCGGATTTTGGACTAGCAAAGCTATATCCAATTGACAATAGCATTGTGTCGCTTACCGCAGCAAGAGGAACAATGGGATACATGGCGCCAGAGTTGTTCTATAAGAACATTGGAGGAGTGTCATATAAAGCAGATGTTTATAGCTTTGGAATGTTGTTAATGGAAATGGTGAGTAGGAGAAAGAACATGAACGAGGGTGAAGATCGTAAGAGTCAGGTTTATTTCCCTTCTTGGATTTACGACCAATTTAGCGAAGGGAATGAAATAGAAATGGGGAATGGTACAGAAGAGGAGGAGAGGATATCAAAGAAGATGATAATAGTTGCGTTATGGTGTATACAAATGAAACCTAGTGATCGTCCTTCGATGAACAAAGTAGTCGAGTTGCTAGAAGGAGATGTCGAGGCCTTAGAAATGCCTCCTAAGCCATTTCAAACTCCGAAAGGAATGCCTGGACAAGGCATTGGACAATTCAGAAATCTACCTTGGTTGCTACCTGGGGAATCTACAAATTCACTTACCATTGTTATAAATAGACGTTGA 1854 0.3835 MSWKMLVNLTVIIMLLWQYPLPCLTETNHQCLLSSCGDIRNITYPFRLQGEPENCGDPNYEISCENNQTILNLDNGKYFVEAINYNNSTIRITDSGSVVSPIYMDTSSCMKGLINSSNYAVFGDLKISELEDSCSILVMVMLSNLHKHDNNDNNLSYVKIHQQLVYGLELSWSEIFCKECQGRGYCKLNNKNEVIGCSRGRPCSRNDISSFKCALKVIIHAAKDVVTEGPHEIGGIIGIIVVIRIIGGILFIPMYMIYKWRRRHLSAYDSVEEFLKTHNNLMPIRYSYSDIKKMTKGFKDKLGEGGYGSVYKGQLRNGHLVAIKMLGGKSRANGQEFINEVATIGTIHHVNVVHLIGFCVEKSKRALVYEFMPNGSLEKHIFSRERMGSLSCEKMFDIALGVARGIEYLHRGCDMRILHFDIKPHNILLDTNFTPKVSDFGLAKLYPIDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMVSRRKNMNEGEDRKSQVYFPSWIYDQFSEGNEIEMGNGTEEEERISKKMIIVALWCIQMKPSDRPSMNKVVELLEGDVEALEMPPKPFQTPKGMPGQGIGQFRNLPWLLPGESTNSLTIVINRR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04121 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Vifa3g04121 617 FunFam serine/threonine-protein kinase PBS1-like 266 371 - -
Vifa3g04121 617 SMART serkin_6 296 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04121 617 PANTHER RUST RESISTANCE KINASE LR10-RELATED 268 583 IPR045874 GO:0004672
Vifa3g04121 617 Pfam Protein kinase domain 299 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04121 617 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Vifa3g04121 617 FunFam PR5-like receptor kinase 372 579 - -
Vifa3g04121 617 Gene3D Transferase(Phosphotransferase) domain 1 372 581 - -
Vifa3g04121 617 ProSiteProfiles Protein kinase domain profile. 296 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04121 617 SUPERFAMILY Protein kinase-like (PK-like) 277 567 IPR011009 -
Vifa3g04121 617 CDD STKc_IRAK 302 569 - -
Vifa3g04121 617 Gene3D Phosphorylase Kinase; domain 1 270 371 - -
Vifa3g04121 617 Pfam Wall-associated receptor kinase galacturonan-binding 34 94 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04121 Vifa-Chr3 1216052420 1216054645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04121 12 580 Receptor kinase-like Gene Family AT1G66910 34.424 2.22e-108 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04121 Pkinase 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04121 - - cam:101507916 996.112