Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04120 ATGAAGGACGTGAAACGACACTCGCTGGAATCGTCTTTCTCGCGAGTGGACTCGGTTGAGTCGGTTAAGAAATTGGAGAATGTTCATCGGAGGAGGTTGAAAATTCGGAGAATGAAGTATAGCTGTCAGACGAAGGTCCACGGCGGAGATGATTTTAGCGGTGGGACAAAAACGGAGAGACGAGAGATTCACGAATCAGTTGAGATATCGCTGTCATTGGCGAGTTCTTCCTCATCGGAGGAAGAGGATCGATCGTGGAAGCAGAAAGATGAAGATGAAGATATATCCTACGGTTCGGTGTCGGTGATAGGATGCAGGAAGGAAATGGAGGATGCGGTGAGTGTTGAGATAGATTTTGCAGTGAAAGAGAGTGAAAAGTGTGATTTCTTTGCTGTTTATGACGGTCACGGTGGTGCTCAGGTGGCGGAGGTTTGTAAAGAGAGATTGCATCAGGTTGTGGCGGAGGAGATGGAGAGATATGGGAATAATGACGTGGAATGGGAGTGGGAGAGAGTGATGGAAGGGTGTTTTGGTAAAATGGATAGAGAGGTGGCTGGTAATGCAGCGGTTAGGACTGTGGGGACCACGGCTGTTGTGGCGGTTATGGTTGCCGGGGAGATTGTTGTTGCTAATTGCGGTGATTCTAGGGCGGTTTTGGGAAGAGGTGGCCAAACGGTTGAGTTGTCTAGTGATCATAAGCCTGAGAGACCTGATGAGTTGATGCGAATAGAAGAAGCTGGTGGAAGAGTCATAAACTGGAATGGCCACCGTGTTCTTGGTGTTCTTGCCACTTCACGATCTATAGGAGATGAGTATCTTCGACCATATGTGATATCAAAACCTGAAGTGACTGTAACAAAGCGAAGCAGTGAGGATGAATTTCTGATACTAGCAAGTGATGGTTTATGGGGAGTGATGTCTAGTGAAATAGCGTGCCAAGTTGTAAGGAAATGCTTCAAAGGGCAAATAAGGAGAGTTTGTGATGGGGTTGGGAATCAGACTAGTCGTGCTGCTGAAGCTGCAGCATTATTGTCTGAGATAGCATTGGCAAAGGGTAGCAGAGATAATACCAGTGTCATAGTAGTTGACCTAAGAGGAACATTAACATCTACTTGA 1116 0.4659 MKDVKRHSLESSFSRVDSVESVKKLENVHRRRLKIRRMKYSCQTKVHGGDDFSGGTKTERREIHESVEISLSLASSSSSEEEDRSWKQKDEDEDISYGSVSVIGCRKEMEDAVSVEIDFAVKESEKCDFFAVYDGHGGAQVAEVCKERLHQVVAEEMERYGNNDVEWEWERVMEGCFGKMDREVAGNAAVRTVGTTAVVAVMVAGEIVVANCGDSRAVLGRGGQTVELSSDHKPERPDELMRIEEAGGRVINWNGHRVLGVLATSRSIGDEYLRPYVISKPEVTVTKRSSEDEFLILASDGLWGVMSSEIACQVVRKCFKGQIRRVCDGVGNQTSRAAEAAALLSEIALAKGSRDNTSVIVVDLRGTLTST 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04120 371 FunFam Protein phosphatase 2C 51 89 371 - -
Vifa3g04120 371 SUPERFAMILY PP2C-like 94 365 IPR036457 -
Vifa3g04120 371 Pfam Protein phosphatase 2C 97 357 IPR001932 -
Vifa3g04120 371 CDD PP2Cc 95 364 IPR001932 -
Vifa3g04120 371 MobiDBLite consensus disorder prediction 71 91 - -
Vifa3g04120 371 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Vifa3g04120 371 Gene3D - 88 367 IPR036457 -
Vifa3g04120 371 SMART PP2C_SIG_2 112 364 IPR001932 -
Vifa3g04120 371 PANTHER PROTEIN PHOSPHATASE 81 364 IPR015655 GO:0004722|GO:0006470
Vifa3g04120 371 SMART PP2C_4 87 362 IPR001932 -
Vifa3g04120 371 ProSiteProfiles PPM-type phosphatase domain profile. 96 364 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04120 Vifa-Chr3 1215126731 1215130234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04120 36 365 PP2C-type Phosphatase Gene Family AT2G29380 46.154 1.69e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04120 K14497 - gmx:100807235 472.241