Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04114 ATGACTGTGAGTACTACTCAGCAAGAGAAGTTTGTTAGGTTTCATGATTCTAATTCAGAGATGTTTTCTGAGAGAATTCATGCTGCATTTAAGCCAACACAGTCGGGGAAATTTAGAACCACATTAAGTTCATTTTCTGAGAAGTTTCAAAGGGGATTGGAATCTGGTTCTGAGAGGATGATGAGGTTCAGAACAACATTCGACTCTTTTCACCATAACAGCGCCCTTTCTAGAAACTTTGGCTCTAAATGGAAAATACTTGATCCACAAGGTTCATTCCTTCAAAAGTGGAACAAGATATTTGTGTTGTTATGTGTCATTGCTGTATCACTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATGGTGAGAGGAAATGTCTTTCACTGGACAGAGGGGTGGAGATTACAGCGACTGTTTTGAGAACTTTCTCTGATGCATTTTATATATTCCACATGATTTTCCAGTTTCGTACTGGATTTATTGCTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTGGTCGAAGATTCTTGGGCAATTGCTAAGAAGTATCTGTCATCATATTTCTTAGTTGACATTCTTGCAATTCTTCCCCTCCCACAGGTGGTGATTCTAGTTATCATCCCGAAGATGAATGGCTTTGAATCGCTAAATACAAAGAACTTGCTGAAATTTGTTGTTTTCTTCCAATATATGCCTCGGCTATTACGAATAATTCCATTATATAAAGAAATTACAAGGACCTCTGGCATTCTCACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTATATGCTTGCAAGTCATGTCCTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGCTGGCGAGAAGCCTGTCAAAGTAATAACATGTGTAAGAAGGCAGATATGTACTGTAATGACCATGGGGGCGGGTTTAAGACAATTTCAACATTCTTGAATGATTCTTGCCCAATACAGGAGGAGGATAAAAAGCAATTTGATTTTGGAATTTTCCTTGATGCCCTTCAATCCGGCGTTGTGGAGTCGAGAGATTTTACCCCAAAACTCTTTTACTGTTTTTGGTGGGGCCTAAAAAATTTGAGTTCTCTTGGTCAGAACCTAGCAACAAGTACCGATTTTTGGGAAATCTGTTTCGCAGTTTTCATTTCCATAGCCGGTTTGGTTTTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACTACAAGATTGGAGGAGATGAGAGTAAAAAGGAGGGATGCAGAACAATGGATGTCTCATCGATTGCTTCCTGACAGCCTGAGAGAGCGAATCAGGCGGTATGATCAATACAAATGGCAAGAAACCAGGGGTGTAGATGAAGACCGTTTAATTCACGATCTTCCCAAAGATTTAAGAAGGGATATTAAGCGCCATCTTTGCTTAGATTTGCTGATGAGGGTGCCAATGTTTGAGAAAATGGATGGACAACTTTTGGACGCAATGTGTGACCGTCTCAAACCAATACTTTACACAGAACAAAGCTACGTTGTTCGGGAAGGAGATCCTGTTGATGAGATGCTCTTCATCATGCGAGGCAAGCTGTTGACCATAACAACTAACGGCGGTAGAACTGGCTTCTTCAACTCTGAATTCTTAAAAGCTGGCGACTTCTGTGGGGAGGAGCTTCTCACATGGGCCTTAGATCCTCATTCCTCATCCAACCTTCCCATTTCCACTAGGACGGTCCAAACCATCATAGAAGTCGAAGCCTTTGCCCTAAAAGCTGACGATCTGAAGTTTGTGGCGTCTCAGTTTCGGCGCCTTCACAGCAAGAAGCTGCGCCACACTTTCAGATTTTACTCGCAACAATGGCGTACATGGGCTGCATGTTTTATACAAGCTGCATGGCGGCGCTACTGCAAGAAGAAGCTTGAAGAGTCTCTTATTGAAGAGGAGAACAGGCTGCAAGATGCGTTGGCAAAGGCTGGTGGTACCTCAACAAGTCTAGGTGCCACCATATATGCTTCCAGGTTTGCTGCCAATGCACTCAGATTATTGCGACGAAACCGTACTGCAAGGAAGATAAGGGTGCCAGAGAGAATACCCGCAATGTTGCTTCAGAAGCCCGAAGAACCTGACTTTACTGAGGAAGAACAATAG 2163 0.423 MTVSTTQQEKFVRFHDSNSEMFSERIHAAFKPTQSGKFRTTLSSFSEKFQRGLESGSERMMRFRTTFDSFHHNSALSRNFGSKWKILDPQGSFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDGERKCLSLDRGVEITATVLRTFSDAFYIFHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIAKKYLSSYFLVDILAILPLPQVVILVIIPKMNGFESLNTKNLLKFVVFFQYMPRLLRIIPLYKEITRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIERETTCWREACQSNNMCKKADMYCNDHGGGFKTISTFLNDSCPIQEEDKKQFDFGIFLDALQSGVVESRDFTPKLFYCFWWGLKNLSSLGQNLATSTDFWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYDQYKWQETRGVDEDRLIHDLPKDLRRDIKRHLCLDLLMRVPMFEKMDGQLLDAMCDRLKPILYTEQSYVVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTIIEVEAFALKADDLKFVASQFRRLHSKKLRHTFRFYSQQWRTWAACFIQAAWRRYCKKKLEESLIEEENRLQDALAKAGGTSTSLGATIYASRFAANALRLLRRNRTARKIRVPERIPAMLLQKPEEPDFTEEEQ 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04114 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 72 715 - -
Vifa3g04114 720 ProSiteProfiles cAMP/cGMP binding motif profile. 490 574 IPR000595 -
Vifa3g04114 720 Gene3D Helix hairpin bin 416 481 - -
Vifa3g04114 720 FunFam Cyclic nucleotide-gated ion channel 1 417 481 - -
Vifa3g04114 720 Gene3D - 98 414 - -
Vifa3g04114 720 SUPERFAMILY cAMP-binding domain-like 419 612 IPR018490 -
Vifa3g04114 720 Coils Coil 642 662 - -
Vifa3g04114 720 CDD CAP_ED 490 621 IPR000595 -
Vifa3g04114 720 SMART cnmp_10 490 621 IPR000595 -
Vifa3g04114 720 FunFam Cyclic nucleotide-gated ion channel 1 488 606 - -
Vifa3g04114 720 Pfam Ion transport protein 97 417 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa3g04114 720 Gene3D Jelly Rolls 488 608 IPR014710 -
Vifa3g04114 720 SUPERFAMILY Voltage-gated potassium channels 88 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04114 Vifa-Chr3 1213945358 1213950291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04114 7 719 Ion Channels AT5G53130 75.419 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04114 K05391 - gmx:100801032 1193.72