Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04109 ATGGAAACTCAAAATCTCACAATAGATGATACTATTACTACCTCATTATTATCTGATATTTTCAATGGAACAGAGTTTGCAGGAGAAGATCTCTTTTCCATTTTGGAAAACCTGGAAAACTTCAATGATTTTCCTATCATTACCAATGACCAAAACTCAAAAACTTCTTTAACTACTCCACAAGATTCTGAAACTGAACCATCACAGAAATGCAAGAGACAGAAGATTGCTCCGAGTTCAGTTTTCAACGAACCAAACAGCGATGGACAACATCGAATGTCGCATATCACGGTCGAGCGAAACCGGAGAAAGCAAATGAATGAGCAGTTATCGATCTTGAAGTCACTCATGCCTTGCTTTTATGTCAAACGTGGAGACCAAGCATCAATAGTCGAAGGTGTAATCGATTACATCAATGAGTTACATCAACTCCTACAATGCCTAGAATCCAAGAAACAAAGAAAAGTTTACAATGAAGTTCTAAGTCCAAGACTAGTTTCAAGTCCAAGGCCTTCACCATTAATAAGTCCTAGAATAGTCTTACCAATAAGTCCAACAACTCCACATTCGCAACAATGGTTGCAACAACATTACAATGGTCATCTTTCATCCGAACCTTCTCCAACTTCATCGGTTTCTTCCATCAACGACAACATCAACGAGCTTGTCGCGAACTCAACTTCCTCGGTTGCTGAAGTTGAGGTTAAGTTTTGTGGCTCACATTTGCTTTTGAAAACTGCTTCGTCGCGAATTCCAGGACAGGTTTTCAGAATAATATCTGTCCTTGAAGATCTAGCACTTGAAATTGTACATGTTAGTGTTAATACTGCTGATGAAACCATGTTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTTGCTCAACATATCCAACAAACATTTTGTTAA 930 0.3817 METQNLTIDDTITTSLLSDIFNGTEFAGEDLFSILENLENFNDFPIITNDQNSKTSLTTPQDSETEPSQKCKRQKIAPSSVFNEPNSDGQHRMSHITVERNRRKQMNEQLSILKSLMPCFYVKRGDQASIVEGVIDYINELHQLLQCLESKKQRKVYNEVLSPRLVSSPRPSPLISPRIVLPISPTTPHSQQWLQQHYNGHLSSEPSPTSSVSSINDNINELVANSTSSVAEVEVKFCGSHLLLKTASSRIPGQVFRIISVLEDLALEIVHVSVNTADETMLNSFTIKIGIECQLSAEELAQHIQQTFC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04109 309 SMART finulus 96 147 IPR011598 GO:0046983
Vifa3g04109 309 MobiDBLite consensus disorder prediction 49 91 - -
Vifa3g04109 309 MobiDBLite consensus disorder prediction 49 65 - -
Vifa3g04109 309 Gene3D - 83 166 IPR036638 GO:0046983
Vifa3g04109 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 141 IPR011598 GO:0046983
Vifa3g04109 309 CDD bHLH_AtFAMA_like 93 164 - -
Vifa3g04109 309 Pfam Helix-loop-helix DNA-binding domain 92 141 IPR011598 GO:0046983
Vifa3g04109 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 164 IPR036638 GO:0046983
Vifa3g04109 309 MobiDBLite consensus disorder prediction 72 91 - -
Vifa3g04109 309 PANTHER TRANSCRIPTION FACTOR FAMA 27 308 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04109 Vifa-Chr3 1211621723 1211622886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04109 21 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 44.838 1.99e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g04109 HLH 5.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04109 K20558 - gmx:100777437 327.02