Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04106 ATGAAACAACAACAGCATAGTATGAATATCCTATGTAAAACCACAGTACACGAAAGTGTTACTAAGAAATACATAAAACCAAAGAGAAACATGAATGCAAGAAAAAACAACCACAACAACAAAAATTCTATTCAAACCGAATTACCGAAAGTGATTCGTGTTATAACTACTGATCCAGATGCTACTGATACTGATTCATCCGGTGATGAATCAGTATCAGTATCAGTATCACAGTTTTCAGTCCCTCGCCGGAGAATCAGAATCAAACAGTATGTCAACATAATCGAAATCAAAACCGTTGCTTCGACGGTTTCCCGAAACAAGAAAAGGTCAGCCAGAGAAATGAAATCTTCCCGGAGACCGGCGAAGGTACAGGCAATCACTGGAGACGAGAGAAAATACCGCGGTGTACGGATGAGGCCGTGGGGAAAATGGGCTGCCGAGATTCGAGATCCTGCGAGCCGTGTACGGTTGTGGCTCGGAACTTTCACCACCGCAGAAGAAGCTGCTAAGGTTTACGATGCTGCAGCTATTAAGTTTCGTGGTAAAGACGCTGTCACCAACTTTTCCACTATTGAGAATGTGGAAGAAGATGAAGATGTGAAGAGAACAACGACAATGAAGGTTGACGAAATCAAAACGGAAATCTCCGTTTCCGGCGAGGATTCCGGCGATGAGTTTGTTAATCTATATTCTCCAACTTCTGTTTTCCGGTTCAGACCGGATGAGATTCATGAATCAAATAAACCGGTTGAACCAGTTAATGAAGATGAACCAGTTGAACCGGTTGAACCCACTGAACCGGTTGGTGAATGTGAAACGAGTTTTTTCGAAGAAACTAATGAGATTTTCCGACAGGAAATGGGGGACGTGTTTAATTTTCCAACAACCTCTGATTACTATTACTCAAACATATTTGATTATGCTCCTATGCAATTTGTTCATGAAACGACACCCGTTCTGTTTAACGAGTGTCGTTTCAGTGATCACGTGGGAGTTGAGAAAACGCACTCACTATCACCAACACTATCACCATCAGCATCAGCTTTATGTGAAGGTGATGATTTTCTTGATGACATCTTGTTTGGTTTAGAGCCTCTCACTGCGCTTTGA 1113 0.4214 MKQQQHSMNILCKTTVHESVTKKYIKPKRNMNARKNNHNNKNSIQTELPKVIRVITTDPDATDTDSSGDESVSVSVSQFSVPRRRIRIKQYVNIIEIKTVASTVSRNKKRSAREMKSSRRPAKVQAITGDERKYRGVRMRPWGKWAAEIRDPASRVRLWLGTFTTAEEAAKVYDAAAIKFRGKDAVTNFSTIENVEEDEDVKRTTTMKVDEIKTEISVSGEDSGDEFVNLYSPTSVFRFRPDEIHESNKPVEPVNEDEPVEPVEPTEPVGECETSFFEETNEIFRQEMGDVFNFPTTSDYYYSNIFDYAPMQFVHETTPVLFNECRFSDHVGVEKTHSLSPTLSPSASALCEGDDFLDDILFGLEPLTAL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04106 370 MobiDBLite consensus disorder prediction 247 270 - -
Vifa3g04106 370 FunFam Ethylene-responsive transcription factor 2 132 191 - -
Vifa3g04106 370 Pfam AP2 domain 133 182 IPR001471 GO:0003700|GO:0006355
Vifa3g04106 370 SUPERFAMILY DNA-binding domain 133 190 IPR016177 GO:0003677
Vifa3g04106 370 CDD AP2 133 189 IPR001471 GO:0003700|GO:0006355
Vifa3g04106 370 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Vifa3g04106 370 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Vifa3g04106 370 Gene3D AP2/ERF domain 132 192 IPR036955 GO:0003700|GO:0006355
Vifa3g04106 370 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 48 241 - -
Vifa3g04106 370 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Vifa3g04106 370 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04106 Vifa-Chr3 1209458515 1209459627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04106 12 362 AP2-EREBP Transcription Factor Family AT4G27950 34.890 1.46e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g04106 AP2 8.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04106 - - psat:127091686 521.161