Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04093 ATGGAGCATGAAAGTCACTCCTTTAATCATACTCGTTCGACACAATCAAACTCTGCTGGTAATGGAACCACAAACATTGAAAACGCCAACAGTAACATGAACAACAATATTGGTACGAGAAATGAGAACCAACGTTTACAAGGAACAATGGACGAGGAAATGCATATGCCTATCAAGAGTGTGACAAAAATCATGCAGCAGGCTATTCCCTCGAATGGAAGAATCTCTAAGGATGCCAAGGAGTCAGTTCAATTGTGTGTGACTGAATTTATGAACATCATCACAAGTGAGGCTAATGAACGATGTAAGGCAGAGAGTCGTAAGATCATTACAGGTGAAGATTTAATATGGGCCATGAATAGGTTGGGCTTTGAGGACTATGTTGACCCTCTTCTTTTATACCATAAAAAATATATCAATCATGAGACTCAACTCAAGAGCATGTCGATTGAACATGAGTTCAACAAGGATGGGTCAGGTGCTAGTGGCTCCAACAATGATGGTGATAGTGGCCAAAATTGA 522 0.4023 MEHESHSFNHTRSTQSNSAGNGTTNIENANSNMNNNIGTRNENQRLQGTMDEEMHMPIKSVTKIMQQAIPSNGRISKDAKESVQLCVTEFMNIITSEANERCKAESRKIITGEDLIWAMNRLGFEDYVDPLLLYHKKYINHETQLKSMSIEHEFNKDGSGASGSNNDGDSGQN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04093 173 Gene3D Histone, subunit A 41 167 IPR009072 GO:0046982
Vifa3g04093 173 MobiDBLite consensus disorder prediction 154 173 - -
Vifa3g04093 173 SUPERFAMILY Histone-fold 52 156 IPR009072 GO:0046982
Vifa3g04093 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 54 119 IPR003958 -
Vifa3g04093 173 MobiDBLite consensus disorder prediction 158 173 - -
Vifa3g04093 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 29 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa3g04093 173 MobiDBLite consensus disorder prediction 1 41 - -
Vifa3g04093 173 PRINTS CCAAT-binding transcription factor subunit A signature 121 139 - -
Vifa3g04093 173 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Vifa3g04093 173 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Vifa3g04093 173 MobiDBLite consensus disorder prediction 10 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04093 Vifa-Chr3 1206373448 1206374065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04093 49 138 CCAAT-HAP3 Transcription Factor Family AT4G14540 54.444 5.38e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa3g04093 CBFD_NFYB_HMF 1.6e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04093 K08065 - bvg:104890715 123.635