Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04085 ATGGTGCCTCCGGGGCCACCTACTCCGATTGGTGGTGCCCAATCTGGGTCGCCTTCACTTATGAGATCGAATTCGGGGATGATGGGGGGTCAGGGTGGACAAGCTTCGTTTCCTTCGTTGGTTTCTCAGCGAAATCAGTATAATAACATGAATATGTTAGGGAACATGTCTAATGTTGCTTCTATGATGAATCAGTCTTTTTCCAATGGGATTCCGAACTCGGGACTTGGTGGATTGGGAAATAGTCAACGTGGTGGTATGGATCCTGGGGCTGAACAGGATCCTTTGTCTGGTGTTGGCAATGGAATGGGATTTGGTAATCCTTCTTCGTCGTTTGGGCAATCAAATATGGCTAACCCTGGGTCATCTGGTCAAGGACAAGGTCAGGGTCAGCAATTTTCAAACCCTTCTGGTAACCAGTTGTTGTCGGATCAACAGCATTCCCAACAACTCGACGCTCAAAATTTCCAACATGGTCAGCAGCAGTCAGCGCAGCAGTTTTCGGCTCCAATGAACTCTCAACAGCAACAACAACATCAACAGCAGCAGCAACATTTTCAATCAATGCGAGGAGGTATAGGTGGTATTGGACCTGTGAAGATGGAGCCTCAAGGAAACAATGACCAGTTTGGGCAGCAGTTGCCATCACTGAGGAATCTTGCTCAAGTGAAATTGGAACCGCAACAACTTCAATCAATGAGAGGTATGGCACCTGTAAAAATGGAGCCCCAACATAGTGATCAACCATTTTTGCATCAACAACAACAGCAACAGCAGCAGCAACAACAGCTCCTCCATATGTCAAGGCAAACCTCTCAGGCTACTGCTGCACAGATGAATCTTTTGCAACAACAGAGACTAATGCAATATCAACAACATCAGCAGCAGCAACTCTTAAAGTCAATGCCTCAGCAGCAACGGTCCCAGCTACCGCAACAGTTTCAACAGCAGAATATGCCTATAAGGTCTCCTGTGAAACCAGCATATGAACCTGGGATGTGTGCTAGGCGGCTGACACATTACATGTATCAGCAACAACATAGACCTGAAGATAACAACATTGATTTCTGGAGGAAATTTGTTGCTGAGTACTTTGCTCCTAATGCCAAAAAGAAGTGGTGCGTTTCCATGTATGGAAGTGGCAGACAAACAACTGGAGTTTTCCCTCAGGATATATGGCACTGTGAAATATGTAATCGTAAACCTGGCCGCGGGTTTGAGGCAACTGCTGAAGTTCTTCCCAGGCTTTTCAAAATAAAGTATGAAAGTGGTACTTTAGAAGAGCTTTTGTATGTTGACATGCCTCGTGAATATCACAATTCCTCTGGCCAGATTGTTCTAGATTATGCCAAAGCAATACAAGAAAGTGTTTTTGAGCAACTCCGCGTTGTCCGAGATGGCCAACTTCGAATAGTTTTCTCCCCAGATCTGAAGATATGCTCTTGGGAATTTTGTGCTCGGCGTCATGAAGAGCTCATCCCCAGAAGATTGTTAATTCCTCAGGTTACTCAGCTTGGAGCAGTTGCTCAAAAATATCAGGCATGTACACAAAATGCAGCACCCAATCTATCCATTCCAGAGTTACAAAATAATTGCAATTTGTTTGTGGCATCAGCTCGTCAGCTGGCAAAAGCCTTAGAAGTTCCATTGGTTAATGATTTAGGATACACAAAGAGATATGTGCGGTGCCTACAAATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTATAGCAGAGAAACAGGAACTGGACCTATGGACAGCTTGTCCAAATTCCCTCGGAGAACAAGTAATTCATCTGCACTTCATAGTCAGGCGCAACAGTCTGAAGATCAATTACAGCAGCAACAACAGCATATGGCGTCCAATAACTCAAATGGTGATCAGAACTCTGTGCAAGCTGCTTCCATGCAAATTCCTTCTAACAATGGCGTGGCAAGTGTAAATAACAATGTCAATTCAGCATCTGCATCGACTACCACAAGCACCATTGTTGGACTTCTCCACCAGAACTCTATGAATGCTAGGCAGCAAAATTCAATGAACAATGCAAGCAGTCCATATGGAGGTAATTCTTCCCATGTTCCATCACCAGGTTCATGCAATACAGTCCCACAAGCGCAACCAAACTCGTCACCTTTTCATTCACCGACACCGTCCTCATCTAACAATCCTCAAAATTCTCACCCGGGTATACCATCTGCAAATCACATGGGTACAGCAAACTCACCAGCTAATAATATTTCCTTGCAACAACAACAGACGTCTATTTCTGGTGAAGTCGACCCTAGTAACGATGCACAGAACTCAGTCCAGAAAATCATTCATGAGATGATGATGTCCTCCCAGATGAACGGAACAGGTGGAATGGTAGGTGCTAATTCTCTTGGAAATGACATGAAGAATGTAAATGGTATCCTACCAGGGAGTACTAATACTGGTCTCAATGGTGGCAATGGCATGATGGGTAATGGAGGTGTGAACAGTAATCCTGGTGTTGGGGTTGGTGGTTATGGCACTATGGGGCTCGGTCCATCTGGTTTACCTAATGGAATGAGGCCAGGAATGGGAAACAATTCAGTCATGAATGGAAGAGGAGGAATGTCATCGATTACTCGGGAACAGGCTATGAATCATCAACAGGATTTGTCAAGCCAACTACTTAGTGGGTTAGGAGCAGTAAATGGTTTTAATAATCTTCAATTTGATTAG 2718 0.4422 MVPPGPPTPIGGAQSGSPSLMRSNSGMMGGQGGQASFPSLVSQRNQYNNMNMLGNMSNVASMMNQSFSNGIPNSGLGGLGNSQRGGMDPGAEQDPLSGVGNGMGFGNPSSSFGQSNMANPGSSGQGQGQGQQFSNPSGNQLLSDQQHSQQLDAQNFQHGQQQSAQQFSAPMNSQQQQQHQQQQQHFQSMRGGIGGIGPVKMEPQGNNDQFGQQLPSLRNLAQVKLEPQQLQSMRGMAPVKMEPQHSDQPFLHQQQQQQQQQQQLLHMSRQTSQATAAQMNLLQQQRLMQYQQHQQQQLLKSMPQQQRSQLPQQFQQQNMPIRSPVKPAYEPGMCARRLTHYMYQQQHRPEDNNIDFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDIWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVTQLGAVAQKYQACTQNAAPNLSIPELQNNCNLFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMDSLSKFPRRTSNSSALHSQAQQSEDQLQQQQQHMASNNSNGDQNSVQAASMQIPSNNGVASVNNNVNSASASTTTSTIVGLLHQNSMNARQQNSMNNASSPYGGNSSHVPSPGSCNTVPQAQPNSSPFHSPTPSSSNNPQNSHPGIPSANHMGTANSPANNISLQQQQTSISGEVDPSNDAQNSVQKIIHEMMMSSQMNGTGGMVGANSLGNDMKNVNGILPGSTNTGLNGGNGMMGNGGVNSNPGVGVGGYGTMGLGPSGLPNGMRPGMGNNSVMNGRGGMSSITREQAMNHQQDLSSQLLSGLGAVNGFNNLQFD 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04085 905 MobiDBLite consensus disorder prediction 581 636 - -
Vifa3g04085 905 Pfam LIM-domain binding protein 337 591 IPR029005 -
Vifa3g04085 905 MobiDBLite consensus disorder prediction 1 38 - -
Vifa3g04085 905 MobiDBLite consensus disorder prediction 680 747 - -
Vifa3g04085 905 MobiDBLite consensus disorder prediction 71 206 - -
Vifa3g04085 905 PANTHER LIM DOMAIN-BINDING PROTEIN 209 899 IPR029005 -
Vifa3g04085 905 MobiDBLite consensus disorder prediction 247 261 - -
Vifa3g04085 905 MobiDBLite consensus disorder prediction 241 261 - -
Vifa3g04085 905 MobiDBLite consensus disorder prediction 103 189 - -
Vifa3g04085 905 MobiDBLite consensus disorder prediction 12 38 - -
Vifa3g04085 905 MobiDBLite consensus disorder prediction 592 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04085 Vifa-Chr3 1202598209 1202604702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04085 1 905 C2H2 Transcription Factor Family AT1G43850 57.684 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04085 - - gmx:100798031 1217.22