Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04084 ATGGAATCCTCGAAGAATCAATACGAATCCCTCTCTTCCGTCGATGAAGACGATTCTAACAAATGCACCGATTTCTACGATATCTATGGTCCTGAGGCTAAAGCAGATGTTGTTTTCAAGTCACCAGAAGAAGATAGATCAACTCTGAATCTCGCTGATGTTCAAGGACTTGTAACTTGGGTTCTCGGTGAAGGTTTCATGCCATCATGGGTTTTTATCAAGAATAAACCTCTTATTCACAAAGTGGTTATGCTCTATATGCCAGGACTGGATGCAGCTTTGTACTTGTCACTGTCCAGAACGCTTCCTAATTTAAAAAAATCGTGTGGCAAACCAAGACCAGTCCTTGCTCTCAGCTGTATATCAGATAATATGCAGACAATAGACGCCCTACTAACATGCAGGCAGAAAAGAAAAAGGGATCTAAATGGTTCAAGTACACCAAAATCTACTCAGACATCACAACAAGAAGGCTGTAGTGCTACCCTCAATCTATCATTCACGGAGCTTACTAAAGACATACCTTTCCCCATTACATACTATACACTAACAGAGAAAGATCTGGATGAGAATGGATATCCTGTTAATAAGCCAGGTTTTCTTCCTACTCTTCCCGCTCCTCCGGGGGCTCCTTTTCATGAGATGTTAGCAGTTGATTGTGAGATGTGCATCACAGGTGAGGGGTTTGAGCTGACAAGAGTTACTCTCGTGGATGTCAAAGGACAGGTTTTGTTAGATAAATTGGTTAAACCTTCAAATCCTATCACTGATTACAACACAAGATTTAGTGGAATAACTTCTGAGATGTTAGATGGGGTGACAACAAGTCTGACAGACATTCAGAAAGAGTTTCAGAAACTGGCTTACCAAGAAACTATTCTTGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGACTTGGTCATTGACACAGCAGTATTATACAAACACCCCCGAGGGTCTTCCCATAAATCTGCTCTTCGGTTTCTTACTAAAAGATTTCTTTCAAGAGAGATACAGCAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGAATTGGCAGTATTGAAGATAAGAAATGGGCCTGACTTTGGTGCTCCTCCATCCTTTATGCGGAAAAAGCTCCTTTCCATTTTGAGTGAGTCTGGAAAAAATTCAGCAATGATTGATGACATATCCATTGTAAAACGATTTGCCTCGGAGTCCTCTAATGCAATTCCTGTGACATCTGATGAAGAAGCACTTGCAAAAACCATCAAGGAGTTGAAGAATGAAAAGGTGCATTTTATCTGGACTCAGTTTTCAGAGTTACACTCATACTTGAAGAAACAAGCTGAGGATTCAGATAGCTTGAATAAAAATATTGCAGAGATGATTGCATTACATACATGTCAGAAGAATAAGTCAAACGGGAAAGGCCTCAAGCCGAATATATCTTCTGAACTGAAGGAAATTGTTACTCGCATGGATAATAAAATTCATAAACTGTATAAGTCATTACCAACAAATGCTATGATGATAGTTTGCACCGGTCATGGAGACACAGCAGTTGTTCGTAGGTTGAGGAAAATGCTTGAGGAGGAAGGTGAAAGTAATTTTGGTCGTGAGAAGATTTTGGAAAGCTTGCAAGAGTTTCAAGCTAGAGCTGAAGTAGCATTGTGTTTTGTAGGTGTAAAACACTGA 1713 0.3987 MESSKNQYESLSSVDEDDSNKCTDFYDIYGPEAKADVVFKSPEEDRSTLNLADVQGLVTWVLGEGFMPSWVFIKNKPLIHKVVMLYMPGLDAALYLSLSRTLPNLKKSCGKPRPVLALSCISDNMQTIDALLTCRQKRKRDLNGSSTPKSTQTSQQEGCSATLNLSFTELTKDIPFPITYYTLTEKDLDENGYPVNKPGFLPTLPAPPGAPFHEMLAVDCEMCITGEGFELTRVTLVDVKGQVLLDKLVKPSNPITDYNTRFSGITSEMLDGVTTSLTDIQKEFQKLAYQETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGNGHDSIEDARATMELAVLKIRNGPDFGAPPSFMRKKLLSILSESGKNSAMIDDISIVKRFASESSNAIPVTSDEEALAKTIKELKNEKVHFIWTQFSELHSYLKKQAEDSDSLNKNIAEMIALHTCQKNKSNGKGLKPNISSELKEIVTRMDNKIHKLYKSLPTNAMMIVCTGHGDTAVVRRLRKMLEEEGESNFGREKILESLQEFQARAEVALCFVGVKH 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04084 570 SUPERFAMILY Alkaline phosphatase-like 383 525 IPR017850 -
Vifa3g04084 570 SUPERFAMILY Ribonuclease H-like 215 368 IPR012337 -
Vifa3g04084 570 Gene3D - 212 372 IPR036397 GO:0003676
Vifa3g04084 570 Pfam Exonuclease 217 363 IPR013520 -
Vifa3g04084 570 SMART exoiiiendus 214 373 IPR013520 -
Vifa3g04084 570 FunFam RNA exonuclease NEF-sp 212 375 - -
Vifa3g04084 570 CDD REX1_like 216 364 IPR034922 -
Vifa3g04084 570 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 26 391 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04084 Vifa-Chr3 1202132879 1202141880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04084 216 363 C2H2 Transcription Factor Family AT2G48100 31.288 5.94e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04084 K14570 - gmx:100802793 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04084 3 1202132879 1202141880 Vifa3g04084 3 1202132879 1202141880 ECH