Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04083 ATGGAATCCTCGAAGAATCAATACGAATCCCTCTCTTCCGTCGATGAAGACGATTCTAACAAATGCACCGATTTCTACGATATCTATGGTCCTGAGGCTAAAGCAGATGTTGTTTTCAAGTCACCAGAAGAAGATAGATCAACTCTGAATCTCGCTGATGTTCAAGGACTTGTAACTTGGGTTCTCGGTGAAGGTTTCATGCCATCATGGGTTTTTATCAAGAATAAACCTCTTATTCACAAAGTGGTTATGCTCTATATGCCAGGACTGGATGCAGCTTTGTACTTGTCACTGTCCAGAACGCTTCCTAATTTAAAAAAATCGTGTGGCAAACCAAGACCAGTCCTTGCTCTCAGCTGTATATCAGATAATATGCAGACAATAGACGCCCTACTAACATGCAGGCAGAAAAGAAAAAGGGATCTAAATGGTTCAAGTACACCAAAATCTACTCAGACATCACAACAAGGCTGTAGTGCTACCCTCAATCTATCATTCACGGAGCTTACTAAAGACATACCTTTCCCCATTACATACTATACACTAACAGAGAAAGATCTGGATGAGAATGGATATCCTGTTAATAAGCCAGGTTTTCTTCCTACTCTTCCCGCTCCTCCGGGGGCTCCTTTTCATGAGATGTTAGCAGTTGATTGTGAGATGTGCATCACAGGTGAGGGGTTTGAGCTGACAAGAGTTACTCTCGTGGATGTCAAAGGACAGGTTTTGTTAGATAAATTGGTTAAACCTTCAAATCCTATCACTGATTACAACACAAGATTTAGTGGAATAACTTCTGAGATGTTAGATGGGGTGACAACAAGTCTGACAGACATTCAGAAAGAGTTTCAGAAACTGGCTTACCAAGAAACTATTCTTGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGACTTGGTCATTGACACAGCAGTATTATACAAACACCCCCGAGGGTCTTCCCATAAATCTGCTCTTCGGTTTCTTACTAAAAGATTTCTTTCAAGAGAGATACAGCAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGAATTGGCAGTATTGAAGATAAGAAATGGGCCTGACTTTGGTGCTCCTCCATCCTTTATGCGGAAAAAGCTCCTTTCCATTTTGAGTGAGTCTGGAAAAAATTCAGCAATGATTGATGACATATCCATTGTAAAACGATTTGCCTCGGAGTCCTCTAATGCAATTCCTGTGACATCTGATGAAGAAGCACTTGCAAAAACCATCAAGGAGTTGAAGAATGAAAAGGTGCATTTTATCTGGACTCAGTTTTCAGAGTTACACTCATACTTGAAGAAACAAGCTGAGGATTCAGATAGCTTGAATAAAAATATTGCAGAGATGATTGCATTACATACATGTCAGAAGAATAAGTCAAACGGGAAAGGCCTCAAGCCGAATATATCTTCTGAACTGAAGGAAATTGTTACTCGCATGGATAATAAAATTCATAAACTGTATAAGTCATTACCAACAAATGCTATGATGATAGTTTGCACCGGTCATGGAGACACAGCAGTTGTTCGTAGGTTGAGGAAAATGCTTGAGGAGGAAGGTGAAAGTAATTTTGGTCGTGAGAAGATTTTGGAAAGCTTGCAAGAGTTTCAAGCTAGAGCTGAAGTAGCATTGTGTTTTGTAGGTGTAAAACACTGA 1710 0.3988 MESSKNQYESLSSVDEDDSNKCTDFYDIYGPEAKADVVFKSPEEDRSTLNLADVQGLVTWVLGEGFMPSWVFIKNKPLIHKVVMLYMPGLDAALYLSLSRTLPNLKKSCGKPRPVLALSCISDNMQTIDALLTCRQKRKRDLNGSSTPKSTQTSQQGCSATLNLSFTELTKDIPFPITYYTLTEKDLDENGYPVNKPGFLPTLPAPPGAPFHEMLAVDCEMCITGEGFELTRVTLVDVKGQVLLDKLVKPSNPITDYNTRFSGITSEMLDGVTTSLTDIQKEFQKLAYQETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGNGHDSIEDARATMELAVLKIRNGPDFGAPPSFMRKKLLSILSESGKNSAMIDDISIVKRFASESSNAIPVTSDEEALAKTIKELKNEKVHFIWTQFSELHSYLKKQAEDSDSLNKNIAEMIALHTCQKNKSNGKGLKPNISSELKEIVTRMDNKIHKLYKSLPTNAMMIVCTGHGDTAVVRRLRKMLEEEGESNFGREKILESLQEFQARAEVALCFVGVKH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04083 569 SUPERFAMILY Ribonuclease H-like 214 367 IPR012337 -
Vifa3g04083 569 CDD REX1_like 215 363 IPR034922 -
Vifa3g04083 569 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 26 390 IPR047021 GO:0004527
Vifa3g04083 569 Pfam Exonuclease 216 362 IPR013520 -
Vifa3g04083 569 SUPERFAMILY Alkaline phosphatase-like 382 524 IPR017850 -
Vifa3g04083 569 Gene3D - 211 371 IPR036397 GO:0003676
Vifa3g04083 569 FunFam RNA exonuclease NEF-sp 211 374 - -
Vifa3g04083 569 SMART exoiiiendus 213 372 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04083 Vifa-Chr3 1202132879 1202141880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04083 215 362 C2H2 Transcription Factor Family AT2G48100 31.288 5.82e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04083 K14570 - gmx:100802793 890.952