Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04082 ATGTCATTGATTATATCGTCAGAGTTGGCTGATGCGTCTTACAGGAATGCCAAACTATACTCGCTAAAGGGAACTGATGTTGCACCCGGCTTGTCCTCTCATAATTTCGTTCCTGATAAGCACAGACGCATGTACATGAATGATTCTTACTCAAGTGAGAGTTATGAAAAATACTTCCTTGATTCACCTACAGAAGAACTGATTGAACCGTCGAGTTCTGGTGTATCGGGAAATTCGGTTCACGCTGAGTGTGATTCTTACCAGATCAGAGCTAGTTCTGGAACTTCTGTGGTCACCGATAACCCATTTGATACTTATGTTTCATCGACAAGGCTTCATGATGCCTATCAGTCGAACTTTGAGTCAGATTTATTGGAAAACGAGAGCCCGGATTGCTTTGAGTTTGATGGTGAAATGCGATTGAAACTGCAAGAATTGGAGAGGGCGTTGCTTAGTGACAATAATGATGATGACGACGATGATGAGGAAAACATGTTTAGAACTGTACAAAGCATGGACATTGATCCTGACTTTGCTGAGTGTGCCAATCTCGTTCAGAACATGTCACAACATGACTCGCCAAAGGAATCTCTGTCATCAGATTCGAATCTTAGTAGCAGCAGTTGCACCAAAGAAATATCACAGATCTGTCCTCGGACGCCGAAGCAGTTACTTTATGAATGTGCTAGTGCACTTTCAGAAGGAAATGAAGGAAAAGCCTCGGCTATGATAGATGATCTCAGGCAGATGGTTTCGATTAATGGAGATCCTTCCGATAGAATTGCGGCCTACATGGTGGAAGGACTTGCGGCTCGTTTGGCTTCGTCTGGAAATTGTATTTATAAAGCTTTGAAATGCAAGGAACCTCCTTCTTCAGATCGTCTAGCGTCAATGCAGATCCTATTCGAGGTGTGCCCGTGTTTTAAATTTGGATTTATCGCAGCAAATGGTGCTATTGCTGAGGCTATTAAAGATGATAAGAAGGTTCACATAATAGATTTTGATATCAACCAAGGAAGCCAATATATAACCCTAATACAAACACTTGCTTCTAGGCCAGGTAAGCCGCCTTTTGTGAGATTGACTGGCGTTGACGATCCTGAATCCGTGCAACGATCTGTTGGAGGCCTAAGTATCATTGGACAAAGGCTTGAAAAGCTTGCAGAAGTACTCGGATTGCCATTTGAGTTCCGAGCCGTAGCATCAAGTTCTTCAATTGTCACTCCATCAATGCTCAACTGTCGTGCCGGGGAAGCAATTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCGCGACGAAAGTGTGTCAACGGTAAATGAACGAGACCAGCTTCTTCGCATGGTCAAGAGCCTTAAACCAAAACTCGTAACAGTCGTGGAGCAAGACGTGAACACAAACACTTCCCCGTTTCTCCCGAGATTCGTTGAAGCCTACAGTTACTACTCTGCTGTGTTTGAGTCACTCGACGCCACTCTTCCGAGAGAGAGCCAAGATAGGGTGAATGTTGAAAGGCAATGCTTGGCAAGAGATATTGTCAATATCATCGCGTGCGAAGGCGAGGAGAGGATAGAGCGGTACGAAGTCGCTGGAAAATGGAGGGCAAGGATGAGAATGGCAGGATTCACTTCATCACCAATGAGTACAAATGTGGAAGAAGCAATTAGGGAACTCATTAGGCAGTACTGTGACAAGTACAAGATAAAAGAGGAAATGGGAGCACTTCATTTTGGATGGGAGGACAAAAACTTGATTGTTGCTTCAGCTTGGAAGTAA 1776 0.4403 MSLIISSELADASYRNAKLYSLKGTDVAPGLSSHNFVPDKHRRMYMNDSYSSESYEKYFLDSPTEELIEPSSSGVSGNSVHAECDSYQIRASSGTSVVTDNPFDTYVSSTRLHDAYQSNFESDLLENESPDCFEFDGEMRLKLQELERALLSDNNDDDDDDEENMFRTVQSMDIDPDFAECANLVQNMSQHDSPKESLSSDSNLSSSSCTKEISQICPRTPKQLLYECASALSEGNEGKASAMIDDLRQMVSINGDPSDRIAAYMVEGLAARLASSGNCIYKALKCKEPPSSDRLASMQILFEVCPCFKFGFIAANGAIAEAIKDDKKVHIIDFDINQGSQYITLIQTLASRPGKPPFVRLTGVDDPESVQRSVGGLSIIGQRLEKLAEVLGLPFEFRAVASSSSIVTPSMLNCRAGEAIVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLKPKLVTVVEQDVNTNTSPFLPRFVEAYSYYSAVFESLDATLPRESQDRVNVERQCLARDIVNIIACEGEERIERYEVAGKWRARMRMAGFTSSPMSTNVEEAIRELIRQYCDKYKIKEEMGALHFGWEDKNLIVASAWK 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04082 591 ProSiteProfiles GRAS family profile. 212 591 IPR005202 -
Vifa3g04082 591 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 196 586 IPR005202 -
Vifa3g04082 591 Pfam GRAS domain family 222 591 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04082 Vifa-Chr3 1202130129 1202131904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04082 1 591 GRAS Transcription Factor Family AT1G21450 62.086 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa3g04082 GRAS 1.4e-134 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04082 - - lja:Lj0g3v0277879.2 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04082 3 1202130129 1202131904 Vifa3g04082 3 1202130129 1202131904 ECH