Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04072 ATGGATAATAATAATAGTAATAATAACCACCAATTCATGTTCCTTCCCTTTCTCCTCTTGTTCACCTTTTTCATAGCTACTACTCATTCTGCATCTTCTGCATCATGTCCTATAGATCTCAGCTATGTTGAAACCTTTCCGTGGGACACATCAACCTGCAGAGACCCAATTGACACACAACACTGTTGTCAATCACTTCTTAGTCTTGTTGGTATAGGACTTGCAAAACACCTCAAAGAAACTCAACTCTTTCAATTCCCAAATGAAAACATTTCCACAGCATGCTTACAAGACTTCAAACTCAAGCTTTCGTCCTTGAAACTTCAACCTTTGTTAGTCCCTACTTGCTTCCCAAACTCAACTCAGTTTGTCACCAACACATCAAGCTGTGCTGGTATCTCAAACATCACAGACTGGAAACAAAAAGTTGGTATGATTAATCCTTTAGATACTTCTTGTAATGGTGATTTGAAAGCTGAAACTAGTTGTAGTGTATGTACTGATGCTGGTTTTAAAGTGACTTCTCAGCTTGTAAATATTGATCCAAAAAATTCATCCAAGTGTTTTTACTTTTCAATTTTGTATGCTATTGGTATTGTGAATCAATTTGGTCCTACAGATCCTGCTGCAGCTGCTTGTATACTTGGTGCTATTGTTGGTGTTGTTCTTGCTTTTGTGTTGATTATTATGTATAAAAAATGGGATAAGATGAGGAGGGAAAATCTTTATCACAGGTCAGTTGAAAACAGTGTTAGAGACAGTGTTTTGCCTAATACAGGAGCTAAATGGTTTCACATATCAGAACTTGAAAAGGCTACAGACAAGTTTTCACTGAAGAATAAGATTGGTCAAGGTGGTGATGGTGTTGTGTACAAAGGAACACTTTCTGATGGAACTTTGGTTGCTGTGAAAGAAATTTTTGATTTGGAAACTAGAGGAGATGAAGAGTTTTGTTATGAAGTTGAGATTATAAGCAAAATTAAGCATAGGTATCTTCTTGCTTTAAGAGGCTGTTGTGTTACAAGTCATAGTGTGAGAGGTAAGAGAAGGTTTTTGGTTTATGACTATATGCCGAATGGAAGTTTAAGTTATCAGCTATCAGTTACCGGTGCTAATAAGCTAACTTGGCCACAAAGGAAGAATATAATGCTTGATGTAGCTAAAGGGCTAGCTTACTTGCATTACGAGATCAAACCGCCGATTTTTCATCGCGATATCAAGGCGACGAATATACTTTTGGACTCGAAAATGAAAGCGAAGGTGGCTGATTTTGGATTGGCGAAACAAGGTAATGAAGGACAGTCTCATTTAACAACAAGAGTAGCAGGAACATATGGTTATTTAGCACCTGAGTATGCTTTATATGGACAGTTAACAGAAAAAAGTGATGTTTATAGTTTTGGTATAGTGATACTTGAGGTAATGAGTGGTAGAAAAGTGCTTGATACAATGAACTCACCTGTTGTTTTGATAACTGATTGGGCTTGGTCACTTGCGAAATCCGGAAAAGTTGATGAAATATTTGATGAATCAATTAGAGATGAAGGGCCAGAGAAAATCATGGAAAGGTTTGTGCTTGTTGGAATTCTTTGTGCTCATGCAATGGTTGCATTGAGGCCTACTATTGCTGAGGCACTTAAGATGTTGGAAGGTGATATTGATATTCCTAATTTGCCTGATAGACCTGTGCCACTTGGTCATGAATCTTTTCAATCTTCTCTGTTGAGTGGTATGCAACAAAGTGGAAGATCAACACCTTTTACTTCATTTTATTCTTCAACTATGAGCACATTTAGTAGAAATTGA 1806 0.3715 MDNNNSNNNHQFMFLPFLLLFTFFIATTHSASSASCPIDLSYVETFPWDTSTCRDPIDTQHCCQSLLSLVGIGLAKHLKETQLFQFPNENISTACLQDFKLKLSSLKLQPLLVPTCFPNSTQFVTNTSSCAGISNITDWKQKVGMINPLDTSCNGDLKAETSCSVCTDAGFKVTSQLVNIDPKNSSKCFYFSILYAIGIVNQFGPTDPAAAACILGAIVGVVLAFVLIIMYKKWDKMRRENLYHRSVENSVRDSVLPNTGAKWFHISELEKATDKFSLKNKIGQGGDGVVYKGTLSDGTLVAVKEIFDLETRGDEEFCYEVEIISKIKHRYLLALRGCCVTSHSVRGKRRFLVYDYMPNGSLSYQLSVTGANKLTWPQRKNIMLDVAKGLAYLHYEIKPPIFHRDIKATNILLDSKMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEVMSGRKVLDTMNSPVVLITDWAWSLAKSGKVDEIFDESIRDEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPNLPDRPVPLGHESFQSSLLSGMQQSGRSTPFTSFYSSTMSTFSRN 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04072 601 PANTHER OS01G0750732 PROTEIN 52 566 - -
Vifa3g04072 601 Pfam SPARK 31 189 IPR043891 -
Vifa3g04072 601 CDD STKc_IRAK 282 551 - -
Vifa3g04072 601 SUPERFAMILY Protein kinase-like (PK-like) 261 567 IPR011009 -
Vifa3g04072 601 Gene3D Transferase(Phosphotransferase) domain 1 357 555 - -
Vifa3g04072 601 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 357 557 - -
Vifa3g04072 601 ProSiteProfiles Protein kinase domain profile. 276 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04072 601 Pfam Protein kinase domain 277 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04072 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Vifa3g04072 601 Gene3D Phosphorylase Kinase; domain 1 237 356 - -
Vifa3g04072 601 SMART serkin_6 276 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04072 601 FunFam Receptor-like serine/threonine-protein kinase At4g25390 241 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04072 Vifa-Chr3 1199371390 1199373264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04072 33 579 Receptor kinase-like Gene Family AT1G11050 51.505 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vifa3g04072 Pkinase 7.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04072 - - mtr:25482441 988.408