Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04068 ATGTCGAAATCCAAGTCATTCCAAGGCGTAAACGTGTTCATGTCGCGAAACCTAGTTCCGCCGGAAGTATTCGACACGCTTCACGACGCCGTTAAAAATAACGGCGCTCAAATTCACCTTTGTTGCGATCCTTCCCGGAATGGCCCCAGCGATTATCACATTATTTCTTGCAGTAAACATGAGAAATTTGAAGATCTTAAATCCAAAGGCTGTAAAATGCTTGGTCCTAGATGTGTTCTTTTGTGTGCTAAAGAACGAAGGCCTCTGCCTAAACAAGGTTTCACCTGTTGCTTTACTATGGATGGTGTCAAAATTCTTGCCTCTGGCTTTGATGCGGATGAGAAGGTTAAAATAGAAGAATTAGTGACTGAAATGGGGGGAGCTCTACAGACTAAACCGTCCTCAGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTCTGAAGTACAAGTGGGCTTTGAATATCCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGATGAGCATCGCGTTGTTCCTCAAGAGTCATATAAGGTTCTTCCTTTCTCGGGGTTAAAGATCTGCGTCACTGGAATCCCAGCAGATAAGCGGAAAGAATTGGAAAAGCTTATTCTACAAAATGGTGGAAAATACTCTGCAGAATTGACAAAGAAGTGCACACATTTGATTTCTGATGCTCCCGAAGGTGATAAGTATAAGGTGGCAAAACGTTGGGGCCACATTCATATTGTGACAATGAAATGGTTTGATCAATCTGTTGCTCGAAGAGCATGTCTTAATGAGGAGTCCTACCCTGTTCAGAGTGGATCTTTATCTTCACGTAAGGTGACTAGAGACTTAACAGTGAAACATAGCCAGGAAAGGGATATCGGGAAAATGCAATCTGGGTCATCCTCAAGAGCTGCAGATTCAAATATGCTAGTTTCTGATTGTGCTGAGTCTATGGATTTAGATCCAGACGCTACACAGTCAGAACATATGTCGTCTTTTTCAAATGTTCCATTATTTGTTAAAGAAGCAGAAGCTGAAGCACCTCCATTACAGACTAGCAATGAATTGAACTTGGACGGTGCTGTTGCCAATGATTCTGAATCAGATGACAATGACCTGTACTTAGCAGAATGTAGGATATTGCTTGTTGGTTTTGAAGCTTCTGAAATGCGGAAGCTTGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGATACATGTATTTTAATGATAAGTTGACACACATAGTAATTGGGAATCCTACAGAAATGGAAAAGAAGGAAGTAAGAAGTATTGCCGCTCTTGGTGTCGTTTATGTTGTTAAAACCTCATGGCTTGAAGACTGTGACCGTGCAAAGAAACAAATCCCTGTTCTTCGACGGCACATTGCATGTGATCTTCTTCTTCCAAAAGCCAACTCAGTTAAAGGAGCGGTTACTGGCATTATGCCTATGGATCAAAGTAAAAGCTCAAGCTTTCGCCAAAGCTTTCAGACTAATCAGGTGGCGGGTGTTAAGGACTTTGGAGTTACAATACCAGAATCTTTGGATAAAAACAAACAAGAGAAACACAGTATGGGTATAAATGTTGTCATGTTCGGTAAAACATCAGATAAAACTATGTCGCAAACTCAACATCCTGATAAAACATTGAGGGTACAAAAGAGTACGCAACATGACTCCAATGTACATGTGAAGTCAAAGAATGTTTTCAAAGGGAAAACATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGCTAATAAGTGGACAAACAAAACAGATTATCAACTATATTATTGAATGCCATGGTGTAAAGCCCAGGTCAACAGGTGATTATGAAAGTACATATATTTCCAGTCACTGGATACGATCTTGTTTGGAGGATGGATCCTTGCTGGACGTGGACAGTCATATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGTTTTGAAAGTTTCCGTTTTTGTGTTTCACAATATGAGGAGAAAGACAGAATTCTACTTTGGAACTTGTGTAAAGTTCTAGGAGCTAAGTTTGCAGATAAGTTGACTAAGAAGGTCACCCATTTGTTGTGTAAATTCACCAATGGGCCCAAGTACGAGGCTTCTTGTAAGTGGGGGATCCGATCAGTTACATCTGAATGGATATTTGAATGTGTTAAACAGAATGGAGTTATTGCCATTGATCAATTTTTGCCCAAAGAAGTCACTAGTCAAGACCAAGAAGCAGGAGTTTGCACAGTGAGTCAATTTCCTACCCAGGCTGTTCGAATGATAAATGACATACCGTCCCAGTTTCCAAGTCAATCACAAAGTTCGAGAAGCACAGCAAATAAAAATGTAGATAGGGGAGTTGACAATCATCGGACACGTTCTAAAACATCAAGCATTAATAGCAAAAAGGCAAGGCTTGTGGAAGAACCTGACCGGTATAATAGGGTCCCTTCTGCAGTAAGTTCAGGCATTCATGTCTCTGACTTGAATTTTTCTGAAGACAATAAGCTCAAAGATGCTCGGGAGATAACCCATGCTGGTCCTGATGTCGCTACTGCTATAGAGGACTTGTTAGAGCAGACAAGCAAGATGCATGATCAGAGGTCGCCAGGGAATACAGGGTGTGAGAGAAGTATCTACTCATCTGATTGTTCAGCCATTGGCCAAGACAATCCAAATCCTCACACTGTCTATGGATTATCAAAGCACTGGTTGAACAGAAATGGAAGAAACGAAGATAATGGTGAGACTCCTCAAGAGCGAAAAGCTGGAATGTATGATGGTTTTAGTGAAACACAAACAGAATCTCAGGTTGTTAGTTATGAAGAAGACTTGTCTGGAAGGCAAATGCTTATAGATAGAGTTCTAACTCGAAGTAGCATGCAGTAA 2937 0.4082 MSKSKSFQGVNVFMSRNLVPPEVFDTLHDAVKNNGAQIHLCCDPSRNGPSDYHIISCSKHEKFEDLKSKGCKMLGPRCVLLCAKERRPLPKQGFTCCFTMDGVKILASGFDADEKVKIEELVTEMGGALQTKPSSDLNFVIVKNVLALKYKWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADKRKELEKLILQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIHIVTMKWFDQSVARRACLNEESYPVQSGSLSSRKVTRDLTVKHSQERDIGKMQSGSSSRAADSNMLVSDCAESMDLDPDATQSEHMSSFSNVPLFVKEAEAEAPPLQTSNELNLDGAVANDSESDDNDLYLAECRILLVGFEASEMRKLVNMVRKGGGSRYMYFNDKLTHIVIGNPTEMEKKEVRSIAALGVVYVVKTSWLEDCDRAKKQIPVLRRHIACDLLLPKANSVKGAVTGIMPMDQSKSSSFRQSFQTNQVAGVKDFGVTIPESLDKNKQEKHSMGINVVMFGKTSDKTMSQTQHPDKTLRVQKSTQHDSNVHVKSKNVFKGKTFCFSNLFPEERRAEIVQWISQGGGELISGQTKQIINYIIECHGVKPRSTGDYESTYISSHWIRSCLEDGSLLDVDSHILYSPLPCRVPLPGFESFRFCVSQYEEKDRILLWNLCKVLGAKFADKLTKKVTHLLCKFTNGPKYEASCKWGIRSVTSEWIFECVKQNGVIAIDQFLPKEVTSQDQEAGVCTVSQFPTQAVRMINDIPSQFPSQSQSSRSTANKNVDRGVDNHRTRSKTSSINSKKARLVEEPDRYNRVPSAVSSGIHVSDLNFSEDNKLKDAREITHAGPDVATAIEDLLEQTSKMHDQRSPGNTGCERSIYSSDCSAIGQDNPNPHTVYGLSKHWLNRNGRNEDNGETPQERKAGMYDGFSETQTESQVVSYEEDLSGRQMLIDRVLTRSSMQ 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04068 978 MobiDBLite consensus disorder prediction 922 936 - -
Vifa3g04068 978 CDD BRCT_TopBP1_rpt2_like 666 741 - -
Vifa3g04068 978 SUPERFAMILY BRCT domain 634 752 IPR036420 -
Vifa3g04068 978 ProSiteProfiles BRCT domain profile. 567 655 IPR001357 -
Vifa3g04068 978 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Vifa3g04068 978 MobiDBLite consensus disorder prediction 782 798 - -
Vifa3g04068 978 FunFam Transcription coactivator 565 661 - -
Vifa3g04068 978 Gene3D BRCT domain 360 461 IPR036420 -
Vifa3g04068 978 Gene3D BRCT domain 98 185 IPR036420 -
Vifa3g04068 978 CDD BRCT 103 170 - -
Vifa3g04068 978 FunFam DNA topoisomerase II binding protein 1 187 279 - -
Vifa3g04068 978 Pfam BRCA1 C Terminus (BRCT) domain 101 170 IPR001357 -
Vifa3g04068 978 Pfam BRCT domain, a BRCA1 C-terminus domain 569 652 IPR001357 -
Vifa3g04068 978 MobiDBLite consensus disorder prediction 280 309 - -
Vifa3g04068 978 Gene3D BRCT domain 186 272 IPR036420 -
Vifa3g04068 978 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Vifa3g04068 978 SUPERFAMILY BRCT domain 569 657 IPR036420 -
Vifa3g04068 978 Gene3D BRCT domain 34 94 IPR036420 -
Vifa3g04068 978 Gene3D BRCT domain 564 661 IPR036420 -
Vifa3g04068 978 SMART BRCT_7 184 261 IPR001357 -
Vifa3g04068 978 SMART BRCT_7 665 741 IPR001357 -
Vifa3g04068 978 SMART BRCT_7 569 645 IPR001357 -
Vifa3g04068 978 SMART BRCT_7 374 454 IPR001357 -
Vifa3g04068 978 SMART BRCT_7 4 86 IPR001357 -
Vifa3g04068 978 SMART BRCT_7 97 174 IPR001357 -
Vifa3g04068 978 FunFam Transcription coactivator 97 185 - -
Vifa3g04068 978 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Vifa3g04068 978 MobiDBLite consensus disorder prediction 922 948 - -
Vifa3g04068 978 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Vifa3g04068 978 ProSiteProfiles BRCT domain profile. 668 751 IPR001357 -
Vifa3g04068 978 FunFam Transcription coactivator 354 464 - -
Vifa3g04068 978 Pfam twin BRCT domain 672 733 IPR001357 -
Vifa3g04068 978 Pfam twin BRCT domain 190 253 IPR001357 -
Vifa3g04068 978 MobiDBLite consensus disorder prediction 540 560 - -
Vifa3g04068 978 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 975 - -
Vifa3g04068 978 Gene3D BRCT domain 663 756 IPR036420 -
Vifa3g04068 978 MobiDBLite consensus disorder prediction 782 824 - -
Vifa3g04068 978 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Vifa3g04068 978 SUPERFAMILY BRCT domain 373 458 IPR036420 -
Vifa3g04068 978 SUPERFAMILY BRCT domain 186 272 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04068 Vifa-Chr3 1198829219 1198841423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04068 1 977 Core DNA Replication Machinery Family AT1G77320 49.466 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04068 K10728 - gmx:100804966 1423.3