Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04063 ATGATCACCGCCTCCAGTGGTAGCCGTACTGTGGTGGTTGGTGTCAAGATGGAAGAACATGAATCACACAGTCACTGCTCTGAGTTGCTTACTTGGTCGTTAGTTAATGTCGCTCAACCTGGTGATCTTATTGTGGCTCTTCATGTTCTTCCAAATCATGAAACTGTGAATAGAGATGGGAAATCGTCTTTGTTTTCTCTTGTAAAAGCATTTGATTCTGTTCTTTCGGGTTATGAAGGATTCTGTAATCTGAAACAGGTGGATCTGAAGCTTAAGATTTGCCGGGGTTCATCGGTGAGGAGGATTCTGGTTAGAGAAGCAAATGAATATCGTGCAACTCATGTTATAGTTGGAGCACCGCGAGGTTTTAGTAAAATTAGGCCATCTATTTCTATAGGTAGGTATTGTGCTAAGAAGCTGTCTAAGGATTGTTGGGTTTTTGCTGTTGATAATGGGAAAGCTGTGTTCAAGAGAGATGGATTGTCGTCTACAAATTGCGCCGACTTAAAAGGCAGTCGAGTTGGATTGCTCGGTTCGATTCAATGGAAATTCGGCAAGAGTTCAAAAGTACTGAATGATGATATCCAAGATTCGATATTGTTGGATTCGTCTTGCCACAAAGCTGTGGATCAAGAGTCTTATAGCGGTGGTGATGGAGAGAATGAGAAGAACTCATTAGCTATGGTGCCTGTAAAGGTAAACGATGCTGGTTCGAGCGTGAAAGCTTTGTATGACAGAGAGGTGGCTGATTTGAAACCTGGTTGGCCACTACTACATAGCAGAATTTCATCATCAGACAGGAGAGTTTCTGAAAGATCGTCGTTTCCTCGGATTTCTGTGGTTCAATGGGCAATGCAGTTGCCCTCTAGAAATCTTTCCTATGATAAAGATCGGTTTTTGGGTCTAGATAGCAAAAGTGGTGCTCTTGTACCGGTGGATGCTGAAATAGGGACGATTGCTTCACCCGAACGCAAATCGATTAACATTCCTAAAGAATTGGTGGGACTTCATGAGAAATACTCGTCTTCTTGTAGATTGTTTAAGTACCAAGAACTTGTGTCAGCAACATCAAATTTCTTGCCTGAAAATTTGATTGGGAAAGGAGGAAGCAGTGAGGTTTATAGAGGCTGTCTTCCGGATGGAAAGGAAGTTGCGGTTAAGATCTTAAAGCCTTCGGAAGATGTTTTGAAGGAGTTTGTTTTAGAGATAGAAATTATCACTACTTTGCATCACATAAACATCATTTCCCTCGTTGGATTCTGCTTTGAAGACGACAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGGAGCCTTGAACATAACCTTCACGGTAATAAGAAAAATCTACATGAGTTCGGTTGGACTGAGAGATATAAAGTAGCATTGGGTGTTGCCAAGGCTTTGGAGTATCTCCATAATAATGGTGACAAAACTGTGATCCATCGCGATGTGAAATCATCAAATGTGTTATTATCGGAGGATTTTGAACCTCAGCTCTCTGACTTTGGGCTTGCTAAATGGGCATCATCCTCGTCATCATACACAACCTGCACCGATGTTGCCGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTTAACGATAAGATTGATGTCTACGCATTTGGTGTGGTGCTTCTTGAGCTTCTCTCGGGGAGGAAGCCTATAAGTGGCGATTATCCTAAGGGTCAAGAGAGCCTTGTAATGTGGGCAAGTCCGATTCTAAATAGTGGGAAGCTGTCGCAATTGTTGGATCCTAGTTTGGGTGATAACTATGATCATGAAAAGATAGAAAGGATGGTCTTAGCAGCCACACTTTGTATCAGACGCGCTCCAGGAGCTAGGCCTCAAATGAGCCTTATCTCAAAGGTTCTTAAAGGTGATGCTGTAGTAATGAAGTGGGCAAGGATAGAAATTAATGCTTTGAAAGCTTCTGAATTGCTTGACGAAGAAGCTTCTCCAACTTCTAACTTACAGTCACACCTAAATCTTGCACTGCTTGATGTGGAGGACGACACACTCTCCTTATGGAGTGTTGATCAAAATGTCTCTTTAGAGGACTACTTGAGAGGCAGGTGGAGCCGTTCATCTAGCTTTGATTGA 2118 0.4216 MITASSGSRTVVVGVKMEEHESHSHCSELLTWSLVNVAQPGDLIVALHVLPNHETVNRDGKSSLFSLVKAFDSVLSGYEGFCNLKQVDLKLKICRGSSVRRILVREANEYRATHVIVGAPRGFSKIRPSISIGRYCAKKLSKDCWVFAVDNGKAVFKRDGLSSTNCADLKGSRVGLLGSIQWKFGKSSKVLNDDIQDSILLDSSCHKAVDQESYSGGDGENEKNSLAMVPVKVNDAGSSVKALYDREVADLKPGWPLLHSRISSSDRRVSERSSFPRISVVQWAMQLPSRNLSYDKDRFLGLDSKSGALVPVDAEIGTIASPERKSINIPKELVGLHEKYSSSCRLFKYQELVSATSNFLPENLIGKGGSSEVYRGCLPDGKEVAVKILKPSEDVLKEFVLEIEIITTLHHINIISLVGFCFEDDNLLLVYDFLSRGSLEHNLHGNKKNLHEFGWTERYKVALGVAKALEYLHNNGDKTVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASSSSSYTTCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKLSQLLDPSLGDNYDHEKIERMVLAATLCIRRAPGARPQMSLISKVLKGDAVVMKWARIEINALKASELLDEEASPTSNLQSHLNLALLDVEDDTLSLWSVDQNVSLEDYLRGRWSRSSSFD 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04063 705 Gene3D Phosphorylase Kinase; domain 1 325 433 - -
Vifa3g04063 705 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 8 150 - -
Vifa3g04063 705 SMART serkin_6 359 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04063 705 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 328 433 - -
Vifa3g04063 705 SUPERFAMILY Protein kinase-like (PK-like) 340 629 IPR011009 -
Vifa3g04063 705 FunFam Putative receptor-like serine/threonine-protein kinase 434 646 - -
Vifa3g04063 705 PANTHER OS08G0249100 PROTEIN 217 640 IPR046958 -
Vifa3g04063 705 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Vifa3g04063 705 ProSiteProfiles Protein kinase domain profile. 359 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04063 705 Gene3D Transferase(Phosphotransferase) domain 1 434 649 - -
Vifa3g04063 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Vifa3g04063 705 Pfam Protein kinase domain 363 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04063 Vifa-Chr3 1196662268 1196665387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04063 346 626 Trihelix Transcription Factor Family AT1G68690 46.154 1.49e-76 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa3g04063 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04063 - - gmx:100305405 940.258