Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04061 ATGTATTGTGTGAATATGAAAATCGGGGTTTGTCCCTGCTTAGTCCGGGGCCAGAATGCAGATCACAACAATGTAAGATCAATGAAGATTCTGATATTGGGAAAGAATCCAGGTTTGAAAGAAGTGGAAGTATTTTCAAGTGCTCCATCTTGTGCTTCTAGTAGTGAAGATAAAAATTGTGGTTCTGATAGTGATTGTTTAGACGCGTCTAATCCTGTCCATGACTTGCTTAGCGTGACTAATATTGACAAACCTATTGACAAACCTACTAAGTCATTAAATGGAAGTACTTCTGAACTCAATCATTTGGATTGTGGGAACAAGCAATTATGTCAGAGTGAATTATCTCTATCACCTGGGAAGTATATAGATGTAGGATGTTCAGAGAATAGGAATCTTGTAGATGTAGGGAATGAATTGAATTCCAATGTCCTTTCAGCTGATATTATAAATACACATGATTCTGCTGATGACAGCGTTTACGGCTTCAATTCCAACAATCTTACAAGTTCAGAAGAGAAAATTACTGTCAATGACAGTGAGAATAATGACATTGATGCAGGGGCTTATTGTGAAAAGATGGGTCTTGCGATCACTACATTGGGACAAAATTCAGATACAACCATCCCTCTGCCATGCAGTGGAATGGTTGCCTCTTCAAGTTTAGGAGATATTAGGATTCAGGGTGGTCAAGATTGCATACAACATACCAGTGTACTGAAGAAGTGTTCTGATGATGGATCATCTAGTTTAGATGAGAGTATCGTTGTTCACCAATTTGGTATAATTAAAGATGCTGAAAAGGCAAGTGTCCCTTGGGATACAGGTAAGAAAGAAAAGAGAAATGTTAGGACTCGTATAAATTTTTTGAGTTTGGATTTGGATGATATATCTCTTACTCCAGTTAGCCATTCAAATGATGCTGATAGAGGAGGCTCAAGAATTTTATTGAAGGATCCATGTCCTTCAGAAGTCCTAGATCATTCTATTCAAAGTCTAGACTTTTACTCACTGTCCAACCAGGTTAGGGGCACTGCTTTACATGGGAAAAGGGCTTTTTCAGAGACTGAATTTTGTGTTGCAAATGCCAACAGTGATGATGAAAATCAGATTTCACCAGTTTCTAAGAGGAAAAAAGCCACTGCTAGGAACCCAGATTTAACTCAATTTCAAACTGAATTCATTGATTCTATTGTAGCTACCACATCTAGTGCAGAAGTTCCTATCAGTTTCAGTGATAGCCAAGAACCTAAGAAAGACGATGTTGCATTGTCAAGCATGGGTATGGATATTCAGTATAATGCTCAGTCGATGCCTTATTCAGACATTTCGGTTATTGGGATTATCAAGGGAGATAATACGGATTCACAGGATGCTGAAAACAATTACCATTATAGAGATGGTGTGCAAAGGTCTCCAAGGGCTGATATGTTATCTAGTGATTTCAATATGAAGAGTGATTCACTACCTCAGGAGAACCTAATATCCTGTCCTGTCGCTGGGGATGGAGTCACCACCGCAATCGATGATGAAAACATTTGCGGGGGTGAAGAAAATCCAAAAACCGAATCTATGGTCAAACATGGTTCTGACTCAGATACTTCTACTTCATCAAAACAGCATACCGAAAAAACTATGAAGTTAGATTACACAATTGGATGTAGTGACCCAATAACAAGGAATATAACACCAGAACCAACCCAAATTTATTCTAAAGTTACACCCCTGGCCCTAAATTCATCTTGTTCTGAATTAAATGGGAGCAAAACTCAGCTTGATGGCGACATCCGTAAAGCGTCTCAGGGTTATTCTTTTTCCTTTCCGAAGCCAAAAACAAAGACTCCTGCCTCATCAATGCATGCTTTAAAATCTCGCACTTGGCATCGGACTGATAATAATAATCCTCCCGCTTCTCTACCTAGAGTCAAATTTTCAGCAAGAATAGTTCCTCCCAGAAAGCCAATTCTCGAAAGGAAAAAGAACTTTCAAAATACTTCTTACATTCGTAAAGGTAACAGTCTTGTCAGGAATCCTACTCCAGCTTCTGCTATACCTCAAATCACCTCTACCAGTCTCATGAGGAAACCTACTCCAGTTTCTGCTATACCTCACATCTCCTCTACAAATCTGCTACCTTTGGGCTTAGGTGAAATACCTAAAGGCACCAAACCTGAAAGCAGGGCTGATTTGATAGATCCGTCAATCTGCTCAAAAACAAAAGCATCTAATATTGTTCTACCCGTTGACAACAAATCAGACGAAAATATATCTTTTCGGTTGCTAGAACCCCCTTCCAGTGGCTGCTGTGAAAACACAGCTGATCTTAGGAAGTCTTCTGAGAGTAATGATGCACCAGTCTCCTCTGGAGATGTACCAAAACAACATGAAGCTCTTGAAAAACAAGCTGGTCCATCTAGCAATGGGGGATGTACAGCCGAAGCAAATGATGGAAATATTTCTTTGAACTCAAAAAGAATAGTTTATGTAAAGCCTAAAACAAATCAATTGGTTGCTACTTCGAGTTCTAGTGATATGGTTGTCTCTACTGATGACAAAGGCCAAACAGCCTTCTCTGATAGCTATTTCAAGAGGAGAAAAAATCAATTGGTTAGAACTACGTTTGAAAACCACACAGTTGCAATACCCAATAACATTGGGAATTCTGACGCCCAAGGAGCTAGTAGAGTACTTTGCAACAGGAGGTTTACCAAGAGGCGGTCACATAAAGTTGCTGGGATGTCAAGTAAATCTTCAAGAGCCTCATTGGTGTGGACACTTGGTAGCAAAAATTCTTCTAGAAATGACAGGAACTCGTGGCATTATCAAAAGTTTCCATGGAAAAGAACAACATATTTAAGAAGCTTCATTCATAATTCTTCTTCAAGCTTCAATAGTGGTTCCTTATCTGCAGCCGGCAAGAAATTGCTTCTGTCGAGAAAGAGGGATACTGTGTACACCAGGTCGACCCGTGGGTTTTCTCTTTGGAAATCCAAAGTTTTAGGCGTTGGCGGGTCTAGTTTAAAATGGTCAAAATCCATTGAGAAGCACTCAAAGAAAGCTAACGAGGAAGCCACACTTGCTGTTGCCGCTGTTGAGAGGAAGAAGAGAGAAAAGAAAAATCCAGCTCGTACTGGTTCTCAGACAAAGAGAGAACGTATTTTTCGTGTTGGTTCAGTTCGCTACCGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGATGATGAGTCCCTGTCCTCTGTCTCAACCAGTTCAGGTTTGGTTTCTAAAAGAGGTTACATCCCAAGAAGATTAGTGATTGGAAATGATGAATATGTCACAATTGGCAATGGAAACCAGCTTATTAGAGACCCAAAGAAACGAATTCGAAAACTGGCAAATGAAAAGGTCAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGTAAGCAGAAGTACTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGGAGGGAAGTGCCCTTACATTCACGACCCCTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCAACCTGCAAATTGACTCATAAGGTTCTTCCAGAGAGAATGCCTGATTGCTCATACTTTTTGCAAGGCTTATGCTCAAACAAAAGTTGTTCATATAGACATGTCAACGTGAACCCTAATGCATCTATTTGTGAAGGATTTCTTAAGGGTTATTGTGCTGACGGGAATGAGTGTCGGAAGAAGCACAGCTACGTCTGTCCTAGTTTTGAAGCAACGGGAACCTGTGCTCAAGGAACCAAATGCAAGCTTCACCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCTGGAGACCAGAACAACGATAGTGGACGTTACTTTGGTTATATTCCGGCTGATGTTTCTGAACCTGGGTTGACGGTGGTTCCCAGCCATTCTCAACAGAATGAAGAACATGAAAATGAACTAACCGACTACATCAGTCTTGATGTGTATGAAGAAGCGGAAGACATGGTTGACGAATCATTTTGTGACAATGACACCATGGATTTTCAGTTGGATATCAAACCTATTTCTATAATACCGAAGTTTGCTTTGCAATCTCAGTTTAGAAGCCCACAAGCTTAG 4134 0.4035 MYCVNMKIGVCPCLVRGQNADHNNVRSMKILILGKNPGLKEVEVFSSAPSCASSSEDKNCGSDSDCLDASNPVHDLLSVTNIDKPIDKPTKSLNGSTSELNHLDCGNKQLCQSELSLSPGKYIDVGCSENRNLVDVGNELNSNVLSADIINTHDSADDSVYGFNSNNLTSSEEKITVNDSENNDIDAGAYCEKMGLAITTLGQNSDTTIPLPCSGMVASSSLGDIRIQGGQDCIQHTSVLKKCSDDGSSSLDESIVVHQFGIIKDAEKASVPWDTGKKEKRNVRTRINFLSLDLDDISLTPVSHSNDADRGGSRILLKDPCPSEVLDHSIQSLDFYSLSNQVRGTALHGKRAFSETEFCVANANSDDENQISPVSKRKKATARNPDLTQFQTEFIDSIVATTSSAEVPISFSDSQEPKKDDVALSSMGMDIQYNAQSMPYSDISVIGIIKGDNTDSQDAENNYHYRDGVQRSPRADMLSSDFNMKSDSLPQENLISCPVAGDGVTTAIDDENICGGEENPKTESMVKHGSDSDTSTSSKQHTEKTMKLDYTIGCSDPITRNITPEPTQIYSKVTPLALNSSCSELNGSKTQLDGDIRKASQGYSFSFPKPKTKTPASSMHALKSRTWHRTDNNNPPASLPRVKFSARIVPPRKPILERKKNFQNTSYIRKGNSLVRNPTPASAIPQITSTSLMRKPTPVSAIPHISSTNLLPLGLGEIPKGTKPESRADLIDPSICSKTKASNIVLPVDNKSDENISFRLLEPPSSGCCENTADLRKSSESNDAPVSSGDVPKQHEALEKQAGPSSNGGCTAEANDGNISLNSKRIVYVKPKTNQLVATSSSSDMVVSTDDKGQTAFSDSYFKRRKNQLVRTTFENHTVAIPNNIGNSDAQGASRVLCNRRFTKRRSHKVAGMSSKSSRASLVWTLGSKNSSRNDRNSWHYQKFPWKRTTYLRSFIHNSSSSFNSGSLSAAGKKLLLSRKRDTVYTRSTRGFSLWKSKVLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVERKKREKKNPARTGSQTKRERIFRVGSVRYRMDPSRRTLQRISDDESLSSVSTSSGLVSKRGYIPRRLVIGNDEYVTIGNGNQLIRDPKKRIRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTPTCKLTHKVLPERMPDCSYFLQGLCSNKSCSYRHVNVNPNASICEGFLKGYCADGNECRKKHSYVCPSFEATGTCAQGTKCKLHHPKKQSKGKKRKRSGDQNNDSGRYFGYIPADVSEPGLTVVPSHSQQNEEHENELTDYISLDVYEEAEDMVDESFCDNDTMDFQLDIKPISIIPKFALQSQFRSPQA 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04061 1377 ProSiteProfiles Zinc finger C3H1-type profile. 1198 1224 IPR000571 GO:0046872
Vifa3g04061 1377 ProSiteProfiles Zinc finger C3H1-type profile. 1225 1252 IPR000571 GO:0046872
Vifa3g04061 1377 PANTHER CCCH ZINGC FINGER 206 1362 - -
Vifa3g04061 1377 SMART c3hfinal6 1225 1251 IPR000571 GO:0046872
Vifa3g04061 1377 SMART c3hfinal6 1252 1274 IPR000571 GO:0046872
Vifa3g04061 1377 SMART c3hfinal6 1172 1196 IPR000571 GO:0046872
Vifa3g04061 1377 SMART c3hfinal6 1198 1223 IPR000571 GO:0046872
Vifa3g04061 1377 SMART c3hfinal6 1143 1171 IPR000571 GO:0046872
Vifa3g04061 1377 ProSiteProfiles Zinc finger C3H1-type profile. 1143 1172 IPR000571 GO:0046872
Vifa3g04061 1377 FunFam zinc finger CCCH domain-containing protein 3 1173 1224 - -
Vifa3g04061 1377 MobiDBLite consensus disorder prediction 771 788 - -
Vifa3g04061 1377 MobiDBLite consensus disorder prediction 769 816 - -
Vifa3g04061 1377 MobiDBLite consensus disorder prediction 710 733 - -
Vifa3g04061 1377 MobiDBLite consensus disorder prediction 515 544 - -
Vifa3g04061 1377 MobiDBLite consensus disorder prediction 1273 1292 - -
Vifa3g04061 1377 MobiDBLite consensus disorder prediction 800 816 - -
Vifa3g04061 1377 Gene3D - 1226 1287 - -
Vifa3g04061 1377 Gene3D - 1170 1225 - -
Vifa3g04061 1377 FunFam Zinc finger CCCH domain-containing protein 7 1226 1287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04061 Vifa-Chr3 1196614695 1196622354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04061 1149 1278 C2H2 Transcription Factor Family AT2G32930 32.353 6.56e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa3g04061 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04061 - - mtr:25482449 1406.35