Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04053 ATGTTCCATCACCTCAAAGATACACAACCTGTTGAACCTCTCACCGGGTCACAGAAACTCCGCGGTTTCACCGTAGCCTATCACCCAAACACTGTTTTCGTCTTTAATTTCAGAACTCATTTTGGAGGTGGCAAGTCTACTGGTTTTGGTTTGATATATGATTCTGTTGAGAATGCTAAGAAGTATGAACCAAAATACAGACTTATCAGGAATGGGTTTGATACCAAGGTTGAGAAGTCAAGGAAGCAAACGAAGGAAAGAAAGAACAGGGCCAAGAAGATTCGCGGAATTAAGAAGACCAAGGCTGGCGATGCTGCCAAGGCTGGAAAGAAGAAATAA 339 0.4277 MFHHLKDTQPVEPLTGSQKLRGFTVAYHPNTVFVFNFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGFDTKVEKSRKQTKERKNRAKKIRGIKKTKAGDAAKAGKKK 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04053 112 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 27 83 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vifa3g04053 112 Gene3D - 14 112 - -
Vifa3g04053 112 PANTHER 40S RIBOSOMAL PROTEIN S24 28 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vifa3g04053 112 Pfam Ribosomal protein S24e 28 78 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vifa3g04053 112 ProSitePatterns Ribosomal protein S24e signature. 41 63 IPR018098 -
Vifa3g04053 112 MobiDBLite consensus disorder prediction 77 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04053 Vifa-Chr3 1195324041 1195324711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04053 29 107 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 82.278 8.91e-45 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04053 K02974 - vvi:100853567 137.502