Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04050 ATGTCAAAGTCTCCCTCTCCTGAACAACAGAGATCCGTTTATTCTGATTCTCAGCCCATGGAATTCAATGAGGAAACAGGAATGGACGATGCCGAATCTACAATGGGATCAGTTGCTAATTTTTTGGAGCAACTGCATGCCAACATGTCTTCATCACTTGAGAAAGAACTTATTACAGCACAATTACTAGGTGTTGCCAGGAGAAGGAAGGATGCTAGAGCACTTATCGGTTCTCATGCCCAAGCAATGCCGTTGTTCATAAGCATTCTCAGAAATGGAACCCCTGTTGCAAAATTTAATGTAGCTTCCATTCTAAGTTTCCTGTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGGGGTTGTATCCCACCATTACTGGCAGTTTTAATATATGAATCCACTGATGCTAGAAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCTGGTGGTCTTTCAGATGATCATGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACCTTATGGAATCAACTACATCCAAAGAACAAGGAAGACAAAGTTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTATGTGGGGACAAAGATGTTTATTGGAAAGCAACATTAGAAGCTGGAGGTGTCGATATCATTGGGGGTCTCTTGTCTTCAGATAATTCTGTTTCTCAGTCAAATGCAGCTTCCCTGTTGGCACGTTTAATGCTGGCCTTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCAACTTATTGGTCAGGAAAATGATATTTCTGTACGAGCCAGTGCCGCCGATGCCCTAGAGGCCCTTTCTTCAAAGTCTACCAAGGCTAAAAAAGCTATTGTTAATGCAGATGGCGTTCCAATCCTTATTGGAGCTATTGTTGCTCCTTCTACAGAGTGTATGCGAGGCGATGGTGGTCAGGCCTTGCAAGAGCATGCAACTCGAGCTTTAGCTAACATCTACGGGGGCATGTCTGCTTTAATACTATATCTTGGAGAGCTTTCCCATTCTCCCCACCTTGCTGCACCAGTTGGTGATATAATTGGTGCTCTTGCTTATACACTCATGGTCTTTGTGGAAAACCATGATGTTGATGAGGAACATTTTGATGCAACTCAGGTAGAGGATAATCTAGTAACTCTCTTAAAGACTAGAGACAACAAGCTGATTCAAGAACGTGTTCTTGAGGCCATGGCCAGCCTTTATGGAAATGATTATCTCTCAAAGTGGCTCGTTCAAGCAGATTCAAAAAAGGTTCTCATTGGACTTATAACTATGGCTGCTCCTGATGTGCAAGATAATCTGATACTTTCATTGACAAGCTTGTGTTGTGAAAGGATTGGAATATGGGAGGCCATTAAAAAACGAGAAGGTATTCAGTTGCTGATATCATTGGTGGGATTATCTAGTGAGCAGCATCAAGAGTACTCGGTTCAATTGTTAGCGATCTTAACTCAGCAGGTTGATGACAGCAAATGGGCAATCACTGCTGCTGGAGGTATTCCACCATTGGTACAGTTGTTGGAGACTGGTTCACAAAAAGCAAGAGAGGAAGCGGCTAATGTTCTTTGGAGTTTGTGCTGCCACAGTGAAGATATCCGTGCCTGTGTTGAAAGTGCTGGAGCTGTACCAGCATTTTTGTGGCTTCTCAAGAGTGGTGGATCAAAAGGACAAGAAGCTTCTGCCAAGGCACTCACAAAGCTTGTCCGAGTAGCTGATTCTGCCACTATTAACCAGCTATTAGCATTGCTCCTGGGGGATTCTACAAGCTCAAAGGCCCATATAGTTCGGGTATTAGGTCACGTGCTTTCTATTGCTTCACAGAAGGATCTCCTTCAAAAGGGATCTGCTGCTTATAAAGGACTGAGATCTCTTGTTCAAGTTCTCAATTCATCAAATGTGGAAACCCAAGAATATGCAGCTTCAGTCCTTGCCGATTTATTCATCACAAGACAAGATATTTGTGATAGTCTTGCAACGGATGAGATTGTGCTTCCTTGCTTGAAGCTTTTGAGTAGCAAAACTCAAGGTGTTGCCACTCAGTCTGCTCGAGCCTTATGTGCTCTGTCTCGTCCAACCAAGAGCAAAGCTGCAAATATGATGTCTTATATTGTAGAGGGTGATGTTGAGCCGCTAATCAAATTAGCTAAAACATCATCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTAGCGAATCTTCTTTTTGATCCTTTTATTGCCGCTGAAGCCCTCGCTGAAGATGTTGTTTCAGCTTTAACAAGAGTTCTGGCAGAAGGAACCTCAGAAGGTAAACAAAATGCATCACGTGCACTTCATGAATTACTGAAGCAGTTTCCAGTAGGTGACGTTCTCAAGGGGAATGCTCAATGCCGTTTCACTGTGCTTGCACTTGTTGATTCATTAAGAGCTGTGGATATGGATGGAACTGATGTTTCAGATACTTTAGGAGCAATTGCACTGCTAGTCAGGACTAAACAAGGTGTCAACTTCCCTTACCCTCTATGGTTAGCTTTGACTGAAATACCATCAAGCTTAGAACTTCTCATCTCCTGTTTGGCTGAGGGGCCTCCCCCTGTGCAAGACAAGGCAATTGAAATTCTGTCTAGGCTTTGTGGGGATCAGCCAGCTGTTCTAGGTGATTTTTTGCTTGCTAATTCGAGATCCATTGTTTCATTGGCTGATAGAATAATAAACTCCTCTAGTTCAGAAGTAAAAGTTGGTGGAGTTTCCATACTAATTTGTGCTGCAAAGGAGAAGAAAGAGATTTCAGTGGATTCACTTGACTCTTCTGGTTATTTAAAACCACTAATATATTCTTTAGTTGAAATGGTAAAGCAGAGTTGTAGCTATTCTTCATTAGATATTGAAGTATTCACCACTAAAGCTTTTATGGAGAGAAATGCATTTCAAGAAGTTGATGTGTTTGATATTCTTGATCCTGCTTTAGTCTTGGGAGGTACTGTTGCCCTGTGGTTGCTCTCAATTATTGTTTCTTTTCATTCGAAAAGCAAGCACACAGTTATGGAAGCTGGTGGACTTGAAGCTCTCTGTGACAAACTTGCCAGACATAGTTCAAACCCACAGGCAGAATATGAGGATACCGAAGGAATATGGATCAGTACCTTGTTCTTGGCAATTTTATTTAAAGATTCAAATATCATTCTTTCACCTGCAACAATGAACATTATACCTTCTATCGCTCTTTTGCTAAGATCCGAAGAAGTAATTGATAAATATTTTGCTGCCCAGGCCATGGCTAGTCTTGTTTGTAATGGTAATAGGGGGATAAATCTTGTCATTGCAAATTCTGGCGCTGTTGCTGGATTGATAACTATGATTGGGCATATTGAGTCGGATGTGCCAAATCTTGTGGCTTTATCTGAAGAATTTTCTTTGGTGCGAAACCCTGAACAAGTTGTTTTGGATACCCTTTTTGAAATTGAAGATTATGGAAGTGATACAAATAAATCAATTCTGGCAGAAGCTGGAGCTCTGGAAGCCTTGAACAAATACCTGTCCTTGAGCCCTCAAGACTCAACTGAGACTGCTATTTCAGAGTTACTGAGAATTTTATTTTGTAACTCTGACCTCATTAATCATGAAGCATCAACAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAATGCAGCAAGAGCACTTCATGAACTCTTTGATGCCGACTCTATCAGAGATTCAGAATTAGCTAAACAGGCCATTCAGCCATTGGTAGACATGCTTAACACAACATCAGGGAGGAATCCACTTGGAAGTTTATGCAAAGTATTGTCTTCTGCTTCTTCTTTGGAACTGAAGAGCCATGCTGCACATCTCTGCTATATTCTTTTTGTTAATAGTAAGATCAGAGCAAGCCCAGTTGCCTCAGAATGCCTAGAACCCCTTATATCACTAATGCAGTCTGGTTCTGAGACAGCAATAGAGTATGGGGTTTGTGCTTTTGATAGATTATTGGAAGATGAACAGCAAGTAGAGCTCGCAGCAGCATATAATGTTGTGGATCTCCTTGTCAGCTTGATTTCTGGTGCAAACTACCAGCTTATTGAGGCCACTATATCTGCTCTATTATAA 4158 0.4139 MSKSPSPEQQRSVYSDSQPMEFNEETGMDDAESTMGSVANFLEQLHANMSSSLEKELITAQLLGVARRRKDARALIGSHAQAMPLFISILRNGTPVAKFNVASILSFLCKDEDLRLKVLLGGCIPPLLAVLIYESTDARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWNQLHPKNKEDKVVEGFITGALRNLCGDKDVYWKATLEAGGVDIIGGLLSSDNSVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLIGQENDISVRASAADALEALSSKSTKAKKAIVNADGVPILIGAIVAPSTECMRGDGGQALQEHATRALANIYGGMSALILYLGELSHSPHLAAPVGDIIGALAYTLMVFVENHDVDEEHFDATQVEDNLVTLLKTRDNKLIQERVLEAMASLYGNDYLSKWLVQADSKKVLIGLITMAAPDVQDNLILSLTSLCCERIGIWEAIKKREGIQLLISLVGLSSEQHQEYSVQLLAILTQQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAVPAFLWLLKSGGSKGQEASAKALTKLVRVADSATINQLLALLLGDSTSSKAHIVRVLGHVLSIASQKDLLQKGSAAYKGLRSLVQVLNSSNVETQEYAASVLADLFITRQDICDSLATDEIVLPCLKLLSSKTQGVATQSARALCALSRPTKSKAANMMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGTSEGKQNASRALHELLKQFPVGDVLKGNAQCRFTVLALVDSLRAVDMDGTDVSDTLGAIALLVRTKQGVNFPYPLWLALTEIPSSLELLISCLAEGPPPVQDKAIEILSRLCGDQPAVLGDFLLANSRSIVSLADRIINSSSSEVKVGGVSILICAAKEKKEISVDSLDSSGYLKPLIYSLVEMVKQSCSYSSLDIEVFTTKAFMERNAFQEVDVFDILDPALVLGGTVALWLLSIIVSFHSKSKHTVMEAGGLEALCDKLARHSSNPQAEYEDTEGIWISTLFLAILFKDSNIILSPATMNIIPSIALLLRSEEVIDKYFAAQAMASLVCNGNRGINLVIANSGAVAGLITMIGHIESDVPNLVALSEEFSLVRNPEQVVLDTLFEIEDYGSDTNKSILAEAGALEALNKYLSLSPQDSTETAISELLRILFCNSDLINHEASTSSLNQLIAVLRLGSRNARYNAARALHELFDADSIRDSELAKQAIQPLVDMLNTTSGRNPLGSLCKVLSSASSLELKSHAAHLCYILFVNSKIRASPVASECLEPLISLMQSGSETAIEYGVCAFDRLLEDEQQVELAAAYNVVDLLVSLISGANYQLIEATISALL 1385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04050 1385 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Vifa3g04050 1385 MobiDBLite consensus disorder prediction 1 22 - -
Vifa3g04050 1385 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Vifa3g04050 1385 Gene3D - 1278 1385 IPR011989 -
Vifa3g04050 1385 SUPERFAMILY ARM repeat 470 797 IPR016024 -
Vifa3g04050 1385 Gene3D - 857 1150 IPR011989 -
Vifa3g04050 1385 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Vifa3g04050 1385 MobiDBLite consensus disorder prediction 1 31 - -
Vifa3g04050 1385 SUPERFAMILY ARM repeat 72 308 IPR016024 -
Vifa3g04050 1385 Gene3D - 157 354 IPR011989 -
Vifa3g04050 1385 Gene3D - 36 156 IPR011989 -
Vifa3g04050 1385 Gene3D - 1156 1277 IPR011989 -
Vifa3g04050 1385 Gene3D - 632 820 IPR011989 -
Vifa3g04050 1385 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 16 1165 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vifa3g04050 1385 SUPERFAMILY ARM repeat 638 1384 IPR016024 -
Vifa3g04050 1385 SMART arm_5 1308 1348 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 156 200 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 1015 1064 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 1167 1207 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 201 242 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 544 584 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 111 151 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 502 542 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 710 750 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 244 285 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 751 791 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 458 500 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 287 336 IPR000225 GO:0005515
Vifa3g04050 1385 SMART arm_5 623 663 IPR000225 GO:0005515
Vifa3g04050 1385 Gene3D - 364 631 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04050 Vifa-Chr3 1194781169 1194786727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04050 454 789 U-box Gene Family AT3G46510 23.304 5.83e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04050 - - gmx:100780150 2201.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04050 3 1194781169 1194786727 Vifa3g04050 3 1194781169 1194786727 ECH