Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04048 ATGCTATCAGATTCACATCAAAACAACAGTAAGTTCACCGCTGAAACGGCGTCGACACTCGTGAATGAACTGAGAGCAACATTTGCTTCCGGTGAAACAATGAGTTACAAATGGAGAGTATCACAACTTAAACAACTCTATAAGATTGTGGAGCATCACGAACAAGAAATCGTAGATGCTCTTCTCAGCGACGTCGGGAAACCGCCGTTGGAAACGGTTGCTTACGAGATTGCTATGTTGAAAAACTCATGTAAAACTGCAATCAAGGAATTGAAGCATTGGATGACTCCGGAAAAGGTCCAGACATCCCTCACTACATTTCCTGCTTCAGCTGAAATAGTGTCTGAACCACTTGGAGTTGTGTTGGTCATCTCTGCATGGAACTATCCATTTTTGCTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGCTGTGGTCTTAAAACCATCAGAAATTGCTCCAGCCACATCAGCATTGCTGGCAAAACTGTTAGGGGAGTACATGGATAACTCATCTATAAGAGTTGTTGAGGGAGCGGTTGATGAAACATCAGCATTACTGCAACAAAAGTGGGATAAAATTTTCTACACAGGTAATGGAAGAGTGGCACGCATCGTGATGGCTGCTGCTGCTAAGCACCTTACACCAGTTGTGCTGGAGCTTGGAGGAAAATCCCCTGTTGTAGTTGATTCAAACTCAAATATCAACTTACAGGTTACAACTAGAAGGATAATTGCTGGAAAATGGGGTTGCAACAATGGACAAGCTTGCATTTCTCCCGATTATATTATAACCACAAAAGACTATGCTCCTAAGTTGGTGGATGCTCTAAAGACTGAATTGGAAAGTTTTTATGGAAAGAATCCATTGGAATCAAAAGATTTGTCACGTATTGTAAACTCAAACCACTTTGCTCGCTTGACTAAGCTTTTGGATGATGATAAAGTTTCTGGTAAGATTGTTCATGGAGGTGAAAAGGATGAAACCAAATTGAGAATTAGCCCGACTCTTCTATTGGACGTCCCGCGAGATTCTCTAATAATGAGTGAAGAGATATTTGGTCCATTACTTCCCATCGTCACGGTGGATAAAATAGAAGAAAGCTTTGATGTGATAAACTCAGGACCAAAGCCTCTTGCTGCATATATATTTACCAACAATAAGAATCTCAAGGAGCAGTTTGTTAAGACGATTTCTGCTGGTGGTTTGGTCATCAATGACACTACTATACACCTTGCAGTTCATACTCTACCTTTTGGAGGAGTAGGTGATAGTGGAGTTGGTGCGTACCATGGAAAATTCTCGTTTGATGCATTTAGCCACAAAAAAGCAGTTCTTTATCGCAGTTTTTTCGGTGATGCTTCTATAAGGTATCCACCATACACCAAAACAAAGTTTAGATTGATGAAGGCTCTCATGACTGGTAGCATAATTGGTATAATTCGTGCTATATTTGGAAAGTCCTAG 1476 0.4092 MLSDSHQNNSKFTAETASTLVNELRATFASGETMSYKWRVSQLKQLYKIVEHHEQEIVDALLSDVGKPPLETVAYEIAMLKNSCKTAIKELKHWMTPEKVQTSLTTFPASAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNAVVLKPSEIAPATSALLAKLLGEYMDNSSIRVVEGAVDETSALLQQKWDKIFYTGNGRVARIVMAAAAKHLTPVVLELGGKSPVVVDSNSNINLQVTTRRIIAGKWGCNNGQACISPDYIITTKDYAPKLVDALKTELESFYGKNPLESKDLSRIVNSNHFARLTKLLDDDKVSGKIVHGGEKDETKLRISPTLLLDVPRDSLIMSEEIFGPLLPIVTVDKIEESFDVINSGPKPLAAYIFTNNKNLKEQFVKTISAGGLVINDTTIHLAVHTLPFGGVGDSGVGAYHGKFSFDAFSHKKAVLYRSFFGDASIRYPPYTKTKFRLMKALMTGSIIGIIRAIFGKS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04048 491 PANTHER ALDEHYDE DEHYDROGENASE 15 482 IPR012394 GO:0006081
Vifa3g04048 491 Pfam Aldehyde dehydrogenase family 11 448 IPR015590 GO:0016491
Vifa3g04048 491 PIRSF ALDH 4 487 IPR012394 GO:0006081
Vifa3g04048 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 446 IPR016162 GO:0016491
Vifa3g04048 491 CDD ALDH_F3FHI 17 450 - -
Vifa3g04048 491 FunFam Aldehyde dehydrogenase 25 229 - -
Vifa3g04048 491 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 222 229 IPR029510 GO:0016491
Vifa3g04048 491 FunFam Aldehyde dehydrogenase 226 428 - -
Vifa3g04048 491 SUPERFAMILY ALDH-like 20 463 IPR016161 GO:0016491
Vifa3g04048 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 226 428 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04048 Vifa-Chr3 1193911756 1193915274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04048 77 489 Aldehyde Dehydrogenase Gene Family AT1G44170 74.334 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04048 K00128 - gmx:100816594 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04048 3 1193911756 1193915274 Vifa3g04048 3 1193911756 1193915274 ECH