Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04047 ATGGGAGATTCAAAGGTTGAAACAATTTCACGATTAGCTCAATGGAAAATCGACAACTTTGGACCTTGTTCTTACAAGAAATCCGACCCTTTCAAACTCGGAATTTGGAACTGGTGTTTGTCTATAGAGAGAAATAGGTATTTGTATATTCATCTGTTTCCTGAACCTTCGCGTGTTTCTAAAGAACAGCCTCCTATTGCTCGCTTCATTCTTCGAGTTTCGAGTACTGCTTCCTCTTCCTCCTCCTCTCGGAGATTTTATATTTCTCCTGTTCATGAAAGGGTACTTAGAACATGTGATGACTTTGTCTGGCCTGTAGATACTACATTCCTTGGTCGATTGATTATTGATGTTGAATTTCTTGACCTGAAGATCTATCCTCTGAATGGTGGAGAAACCAGTTCTATATGGCCATCTGACGGAAAACTGCAATCTGTTGCAACTCAAAATACTCTCCGATGTCTCTCTCGCATGCTTGACGAAGCTATACATGCTGATCTCACCATTATAACTTCAGACGGTACACTAAAGGCTCATAAGGCAGTTATGACCGCAACTTCTCCTGTGTTCGAAGCCTCATATCATGACAGCGACAATGAGAAAGAGTCATCTACAATCCACATAGAAAACATGTCTCAAGAATCCTGCACAGCCCTTCTGAGTTACATGTACGGAACAATAAAACCTGAAGATTTCTGGAAGCACAGGCTTGCATTGCTTGGAGCAGCCAAGAAATACGAAATCAGTGATTTGAAAGATGCGTGCGAGGAAAGCCTACTTGAAGATCTTAACTCGGGAAATGTTCTGGAAAGACTAAACGAGGCTTGGATGTACCAGCTGCACAAGTTGAAGAAAGGATGTTTTGCGTTCCTATTTGATTTTGGTAAGATATATGATGTTAGAGATGAAATAAATACGTTTTTTCGCCATGCAGAAAGGGAGCTAATGTTGGAGATGTTTCAAGAAGTACTTACAATTTGGAAATAG 987 0.4053 MGDSKVETISRLAQWKIDNFGPCSYKKSDPFKLGIWNWCLSIERNRYLYIHLFPEPSRVSKEQPPIARFILRVSSTASSSSSSRRFYISPVHERVLRTCDDFVWPVDTTFLGRLIIDVEFLDLKIYPLNGGETSSIWPSDGKLQSVATQNTLRCLSRMLDEAIHADLTIITSDGTLKAHKAVMTATSPVFEASYHDSDNEKESSTIHIENMSQESCTALLSYMYGTIKPEDFWKHRLALLGAAKKYEISDLKDACEESLLEDLNSGNVLERLNEAWMYQLHKLKKGCFAFLFDFGKIYDVRDEINTFFRHAERELMLEMFQEVLTIWK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04047 328 Gene3D Potassium Channel Kv1.1; Chain A 139 292 IPR011333 -
Vifa3g04047 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
Vifa3g04047 328 SMART BTB_4 165 263 IPR000210 GO:0005515
Vifa3g04047 328 ProSiteProfiles BTB domain profile. 165 224 IPR000210 GO:0005515
Vifa3g04047 328 Pfam BTB/POZ domain 158 261 IPR000210 GO:0005515
Vifa3g04047 328 SUPERFAMILY POZ domain 147 261 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04047 Vifa-Chr3 1193385869 1193388012 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa3g04047 BTB 6e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04047 K10523 - gmx:100775687 542.347