Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04046 ATGGGAGATTCAAAGGTTGAAACAATTTCACGATTAGCTCAATGGAAAATCGACAACTTTGGACCTTGTTCTTACAAGAAATCCGACCCTTTCAAACTCGGAATTTGGAACTGGTGTTTGTCTATAGAGAGAAATAGGTATTTGTATATTCATCTGTTTCCTGAACCTTCGCGTGTTTCTAAAGAACAGCCTCCTATTGCTCGCTTCATTCTTCGAGTTTCGAGTACTGCTTCCTCTTCCTCCTCCTCTCGGAGATTTTATATTTCTCCTGTTCATGAAAGGGTACTTAGAACATGTGATGACTTTGTCTGGCCTGTAGATACTACATTCCTTGGTCGATTGATTATTGATGTTGAATTTCTTGACCTGAAGATCTATCCTCTGAATAGTCAGGGTGGAGAAACCAGTTCTATATGGCCATCTGACGGAAAACTGCAATCTGTTGCAACTCAAAATACTCTCCGATGTCTCTCTCGCATGCTTGACGAAGCTATACATGCTGATCTCACCATTATAACTTCAGACGGTACACTAAAGGCTCATAAGGCAGTTATGACCGCAACTTCTCCTGTGTTCGAAGCCTCATATCATGACAGCGACAATGAGAAAGAGTCATCTACAATCCACATAGAAAACATGTCTCAAGAATCCTGCACAGCCCTTCTGAGTTACATGTACGGAACAATAAAACCTGAAGATTTCTGGAAGCACAGGCTTGCATTGCTTGGAGCAGCCAAGAAATACGAAATCAGTGATTTGAAAGATGCGTGCGAGGAAAGCCTACTTGAAGATCTTAACTCGGGAAATGTTCTGGAAAGACTAAACGAGGCTTGGATGTACCAGCTGCACAAGTTGAAGAAAGGATGTTTTGCGTTCCTATTTGATTTTGGTAAGATATATGATGTTAGAGATGAAATAAATACGTTTTTTCGCCATGCAGAAAGGGAGCTAATGTTGGAGATGTTTCAAGAAGTACTTACAATTTGGAAATAG 993 0.4058 MGDSKVETISRLAQWKIDNFGPCSYKKSDPFKLGIWNWCLSIERNRYLYIHLFPEPSRVSKEQPPIARFILRVSSTASSSSSSRRFYISPVHERVLRTCDDFVWPVDTTFLGRLIIDVEFLDLKIYPLNSQGGETSSIWPSDGKLQSVATQNTLRCLSRMLDEAIHADLTIITSDGTLKAHKAVMTATSPVFEASYHDSDNEKESSTIHIENMSQESCTALLSYMYGTIKPEDFWKHRLALLGAAKKYEISDLKDACEESLLEDLNSGNVLERLNEAWMYQLHKLKKGCFAFLFDFGKIYDVRDEINTFFRHAERELMLEMFQEVLTIWK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04046 330 ProSiteProfiles BTB domain profile. 167 226 IPR000210 GO:0005515
Vifa3g04046 330 Gene3D Potassium Channel Kv1.1; Chain A 141 294 IPR011333 -
Vifa3g04046 330 PANTHER OS08G0495500 PROTEIN-RELATED 1 330 IPR044714 -
Vifa3g04046 330 Pfam BTB/POZ domain 160 263 IPR000210 GO:0005515
Vifa3g04046 330 SUPERFAMILY POZ domain 149 263 IPR011333 -
Vifa3g04046 330 SMART BTB_4 167 265 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04046 Vifa-Chr3 1193385869 1193388012 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa3g04046 BTB 6.1e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04046 K10523 - gmx:100775687 541.576