Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04033 ATGTCTCACAATCGCATCACCACCGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCTTTCCTCCATTTCCTCAACCACGTTGAACCTAGCCCCGGGGTTGATGCTGAGGGAATTGAGGTTGCTAGGGAGTGTTTGGTTGAGGCTTTTAGGATTAACTCGTCTTCTGTAAGCGGTGAACCTGATTCGTTGGTTGATATATTCAAATCTTTTGATGGAAACAAGCAATGTGAAGTTGGTAGGGTGGATTCTATGAAAGCTTCGAGTTCACTCTCTGATCAGAATGCTGCTGCTGATAAAGACCATCCTGAGGCGTCGGAATCCATGGATGAAGATTTGGCAGAGGACCCTGACATTTCTGTGTCTAAAGATGAACTCTGTGGACAATTCTTTGCTGCTTTAGAGAAAAAGCGCTATTTCAGGACCAATATTGATGGAGGTGATGACATAGTGCAATTGGAGAAAGCATCTCGCTTATTTGATAATGGTTTTACGGAGATGGAAAAATCTGGGTATCTGCAGTTTAATATGAAGAATTTGGCTGAGTCACTAAAAGCACTAGGTAACAAGGAAATGCAATCCAAGCAATACAATGATGCAGTTGAGTTGTATAATTGTGCAATTGCGATAAATGAAAAGAATGCTGTTTACTACTGCAACAGGGCAGCTGCTTATACTCAAATTAACAAATATACCGAGGCAATAGAAGATTGTCTTAAATCTATCGAGATTGATCCGTACTACAGTAAGGCATACAGTCGTCTGGGATTAGCTTATTATGCACAAGGAAAATACAGAGATGCTATTGATAAAGGGTTTCAAAGAGCCTTGCAATTGGATCCCAATAATGAGACTGTTAAGGAAAATATAAGGGTAGCTGTGCAGAAGTTGATGGAAGAGCAACATAATGCCGGTCACAATCAGAATTCGAGATCATCTCCAGAATTCCAAAACCATTCTGCAAGGGGTTCGACAAGCCACGCAGCTCCACCTACATTTGCCTCAATGCAATTTAACCCCAGCAATTTGGCAAGCATGTTCATGTCGGCTACAAATGCACATCAGGGGTCGCATTCTCAGGAAAGTCAAGAAAATGCCAATAGTAGTGGAGCTAATGAACCCGGAATTCAGTTTGGGGCTAATGTTAACGTAAACCATGATCAAATTCCTCAGGACCTAAGGGGCGCCTTTCAATCTGTGATGGGGATGTTCTCAGGGAATGTACCTCCTGGGCAACCACATGATCAAATGAATGGAAGTCAAGAAGATGCCAATAGTGGTGAAGCTAACGAACCAGAAATTCAATTTGGGGGACGTGTTGATCTAAACTCTGATCAACTCCCTCAGGAACTAAGAGTCTTTCAAAATGTGATAGATATGTTATCAGGGAATGTACCTCCAGGGCAACCACATGATCAAACGAATGAAAGAACAGCACCAAACTAA 1443 0.4227 MSHNRITTDSPLSRRIVLSFLHFLNHVEPSPGVDAEGIEVARECLVEAFRINSSSVSGEPDSLVDIFKSFDGNKQCEVGRVDSMKASSSLSDQNAAADKDHPEASESMDEDLAEDPDISVSKDELCGQFFAALEKKRYFRTNIDGGDDIVQLEKASRLFDNGFTEMEKSGYLQFNMKNLAESLKALGNKEMQSKQYNDAVELYNCAIAINEKNAVYYCNRAAAYTQINKYTEAIEDCLKSIEIDPYYSKAYSRLGLAYYAQGKYRDAIDKGFQRALQLDPNNETVKENIRVAVQKLMEEQHNAGHNQNSRSSPEFQNHSARGSTSHAAPPTFASMQFNPSNLASMFMSATNAHQGSHSQESQENANSSGANEPGIQFGANVNVNHDQIPQDLRGAFQSVMGMFSGNVPPGQPHDQMNGSQEDANSGEANEPEIQFGGRVDLNSDQLPQELRVFQNVIDMLSGNVPPGQPHDQTNERTAPN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04033 480 SMART tpr_5 180 213 IPR019734 GO:0005515
Vifa3g04033 480 SMART tpr_5 248 282 IPR019734 GO:0005515
Vifa3g04033 480 SMART tpr_5 214 247 IPR019734 GO:0005515
Vifa3g04033 480 MobiDBLite consensus disorder prediction 301 336 - -
Vifa3g04033 480 MobiDBLite consensus disorder prediction 350 378 - -
Vifa3g04033 480 MobiDBLite consensus disorder prediction 85 116 - -
Vifa3g04033 480 Pfam Tetratricopeptide repeat 214 246 IPR001440 GO:0005515
Vifa3g04033 480 Gene3D Immunoglobulin FC, subunit C 3 72 - -
Vifa3g04033 480 ProSiteProfiles TPR repeat profile. 248 282 IPR019734 GO:0005515
Vifa3g04033 480 Gene3D Tetratricopeptide repeat domain 174 335 IPR011990 GO:0005515
Vifa3g04033 480 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Vifa3g04033 480 PANTHER LD24721P 3 417 IPR047150 -
Vifa3g04033 480 MobiDBLite consensus disorder prediction 410 427 - -
Vifa3g04033 480 Pfam Tetratricopeptide repeat 249 282 IPR013105 -
Vifa3g04033 480 ProSiteProfiles TPR repeat profile. 214 247 IPR019734 GO:0005515
Vifa3g04033 480 MobiDBLite consensus disorder prediction 460 480 - -
Vifa3g04033 480 MobiDBLite consensus disorder prediction 400 430 - -
Vifa3g04033 480 MobiDBLite consensus disorder prediction 466 480 - -
Vifa3g04033 480 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 175 327 - -
Vifa3g04033 480 SUPERFAMILY TPR-like 179 292 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04033 Vifa-Chr3 1189288432 1189302539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04033 179 278 U-box Gene Family AT3G07370 33.000 1.36e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04033 K16365 - gmx:100799770 559.296