Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04030 ATGAACAACCCCTGCGATCTCGCCACACCTAATTCCCAATCAGTACCTGAACAAACCGAAGAGTTTCAACCATCATGTGCCCCCAAAACCACCAACAAGAAGAGGAAGTCACCAGGATTAACCACTCCTGTGAAGAAATCCTCCAGGAATAATACGCCGAGGAAAAAAGTTTTGGGTGATGGTGTTAAGGGGAGTACTTTGCCTAATGGATTTAGGAAAATTGATTTGCGGTTGGAGGCAAAATTGTCAGCTGAGGAAAATTCAAAGATGTTTGCGGGACGGCAAATACATCCGTTCTTTTCATCGTGGAAGGTGGAGAAGAAATCTAGGGATTCAGCTGGTTCAGAAGGCTGTTTGTCTGATGCTAAGGGGGAGAGTAGAAGAACTATCTGCGGTCCTATTCATGTATTTGAAGAGATTCGGGATTATACTTCATCTCTTGACTGGAGTGGCTGGAAATTTTCGGGAAATACCACTGTTGTAGATTGTGGTCCAGAAAGTTCAAATTTATCTGTTATGGAGGGTTCTGTTGAACCCTTAAATTTTGATAACTTTCTTAGAGGTGTGAAACCCTCAAGCGCTTCAATTTCTCAGAATGCAGTGTCTTATTCAGATAAGCTATCTACACTATCAGAAAATATGAAGGAAATGTCACCAGAAAACTCAGCTGTGCTAGCTAATGACCAAACAACATGCACTTTAAAGCCGGAAGATGGCATAGTGGACTTGGAGGTGAACGATGACAGTACTGTATCTGGGCAAGCATGCATTTTTGGAAAATCAGATGCCAAGCCACCGAGTATGTTTCTTCGAGAAAGAATGAACTCTTTCTGCCATAGTTGTGAAGATAATGCTGAGAGCAGCTTATGGATACACAAGTACAAACCAACAAAAGCCTCGGAGGTATGCGGTAATAATGAATCCCTGAAATTCTTGCGTGACTGGTTACATCTTTGGCATGAAAGACGTTATCAAAACAGAAAGGGTTCCTCTAACAAGGATCATATTGGCATACCAAATGTTGATAGTGAGTATAACTGTCCTGATGATAACCATGCTTCAAAAGATGAGGGTTCCCTGAAGAATGTTCTTTTAATTACAGGACCAGTTGGGAGTGGCAAGTCTGCAGCTGTATATGCTTGTGCCCGAGAGCAAGGGTTTGAAGTTTTAGAGCTCAATGCATCAGACTGGCGAAATGGGGCTGCTGTCAAGCAGTATTTTGGAGACGCTCTTGGATCACACTGTGTCAAAGGGTTAGTGAAACATTCTGTCAGTTTAGAGAAGAAAAGTATGAAATTGCTCCCAGCTCCAGCTTCACCTAATGTGAAAGCAGCTGAAGAGATGGCTGATGATGTGATTGAAATGATAGCCATATCCGATGATGGAACTCATAGTCCTGGTGGAACATCTCAGAAGTTGCACGATATTAATGATGAACTTGCATCTGATACTGTCCAAACTTTAATTCTAGTTGAGGATGTTGACATCCTTTTTCCTGAAGACCGTGGATGTATTGCTGCCATACAACACATTGCTGAGACAGCAAAAGGGCCAATTATACTGACCAGCAACAGTAATAATGCTAGCCTGCCAATTAATCTCTGTCGACAACGTGTTTCTTTCTCATTGCCATTGCCGGATGAGTTGCTTCGCCATTTGTTCATGGTTTGTGGCACAGAAGAAGTTAACTTCAATCCTCTTTTACTAGAGAAGTTTATCCAGTCTTGTGACAGAGATATTCGTAAAACCATTATGCATCTTCAGTTCTGGCTGCAGAATAAAAAATATAGCACAGACAAGAAAGTGCAGACACTATATGGCTCACTTCCTTTTGATCTTGAGGCTGGTCATAAGATACTACCAAAGATGATACCGTGGAGTTTTTCCTCTGAGTTATCCAAACTAATTGATAATGAAGTTTCCAAGTCAATAATCATAGCAGAAAATAACTCAAGATGGGAAGGGTTAGTTAACGAAGAGCTTTGCATAAATGACGAGCAAAATAGCTTAGATGTGCAGTGTACAGGAACTGTTTATTTAGAGCCCAAGATAGAGGTCATGAAGAGAATTGAACCTATTACAGACTGCAGTGAGTTTGATAGTCAATATAGTGCTATCACTGAGCTTAGTAATTGTTCTGGTTCCCCAGTAACATCCTCTTTGCAAAAGGACCAAGGTCAACTTTTTGTGATGTCCTCTGTTGATATGGATAAGGGTCCAAATAATAGGCATTCTGTAAATGTTCATGACGAAGCTTACACGAGACAAACCCATGAAGGCAACGCTGAATCTTTCTTTAAGTTTCTATTGAATCAAAGCTATGCCAACATGTCTTTTTGCGAGCTGCTGCATTCTAGTTTGGAAGATTCAGAGGAGGAACATTGTAAATATTTGGAAACAACTTATGATGCATGCTTAAACAAAACACACAAATCACCTGATCTGTCCCGTTTTCCAGAACCAAGTTTTGTTTCTGAGACTGCAAAATCTGAAGTAGTGTCTTCTGGGCAGCTTGCCTGTCCAGTAGATGTTTCTCTGGATAATGAACTGAAACCATTCTCTTTCAGGGTTTGTCAGAACTTGGCCGAAGTGCCTAAAGATCCAGATTTGTTGGTGAATACTGAAATTCCCAAATCTTCTCCAAGAGCAACTTCACAAGATCTTACTGATGTGAACATGGAAATTGCATCTGCATCTGTTTATAACACGATGGATGAGTGCAGTCAAACTGATTTAAAGTTGGAGTCAAAGTCTGTTGACTGTCCATCTATTGAGATAGATATGGTGCAAAATTCGTGGAGGAAACTTCGTGATTGTCAAACAGATTTAAAACAGCATGCCACCTCAGAACAGATAGGTGCTATCGAAGTTGCTAAACTTGCTAGTGGGCTGAGCGATCTAATTTCAGAAGCTGACTTGTTGTTTCGTAATCACCAGCAAAAACAGTGTGGTATTATGGAACCTCCAATTTTCCTGGCTGATGATGCCACATTTAGTTGGTATGATGAGCAAATGATGATGTCAACTGTTGCTGAACATGGTTTCTGCTTTTATGCCAAGCATATAGTTGACGCGGGATCCAAATTCGGTTTTGAGAACAGGGTAGACGTAACTTCAGAGATGTTGGCTTCTACTACAAATATTATGGCTTTGGGGAAGTTGTCTAGACAGGACCACACCAAAACAATGAGTAACTATACTAAAGAGCTATTAGAGGTGAACAACACAAGAAATGATAAAAAGAGTATGCAATACAATGAACGCAGACCATCTCTGTTCAATGTGATCCGATCCATTGTTCCTAAAAGATCATCATCTACAATTAAAGGCATTGCATTCAACGATGTTCTTTCTTCACTACGCCAAATTTCAATTTCAGAGGGTTTCCGCATGTCACAAGGTGTTAAAAACATGAGAAAAGGAAGGCGAAGTGCTCGACATTATTTGAGCAGAGGTAAAATGATGTTATCTCCTGAGGATATATCATTGGTGTGTGAAGGTGACTTGTACAGAAAGATATACTCACAGTATGCTGCTAACATGGAAAATATAACAGTACATGATTGA 3567 0.4045 MNNPCDLATPNSQSVPEQTEEFQPSCAPKTTNKKRKSPGLTTPVKKSSRNNTPRKKVLGDGVKGSTLPNGFRKIDLRLEAKLSAEENSKMFAGRQIHPFFSSWKVEKKSRDSAGSEGCLSDAKGESRRTICGPIHVFEEIRDYTSSLDWSGWKFSGNTTVVDCGPESSNLSVMEGSVEPLNFDNFLRGVKPSSASISQNAVSYSDKLSTLSENMKEMSPENSAVLANDQTTCTLKPEDGIVDLEVNDDSTVSGQACIFGKSDAKPPSMFLRERMNSFCHSCEDNAESSLWIHKYKPTKASEVCGNNESLKFLRDWLHLWHERRYQNRKGSSNKDHIGIPNVDSEYNCPDDNHASKDEGSLKNVLLITGPVGSGKSAAVYACAREQGFEVLELNASDWRNGAAVKQYFGDALGSHCVKGLVKHSVSLEKKSMKLLPAPASPNVKAAEEMADDVIEMIAISDDGTHSPGGTSQKLHDINDELASDTVQTLILVEDVDILFPEDRGCIAAIQHIAETAKGPIILTSNSNNASLPINLCRQRVSFSLPLPDELLRHLFMVCGTEEVNFNPLLLEKFIQSCDRDIRKTIMHLQFWLQNKKYSTDKKVQTLYGSLPFDLEAGHKILPKMIPWSFSSELSKLIDNEVSKSIIIAENNSRWEGLVNEELCINDEQNSLDVQCTGTVYLEPKIEVMKRIEPITDCSEFDSQYSAITELSNCSGSPVTSSLQKDQGQLFVMSSVDMDKGPNNRHSVNVHDEAYTRQTHEGNAESFFKFLLNQSYANMSFCELLHSSLEDSEEEHCKYLETTYDACLNKTHKSPDLSRFPEPSFVSETAKSEVVSSGQLACPVDVSLDNELKPFSFRVCQNLAEVPKDPDLLVNTEIPKSSPRATSQDLTDVNMEIASASVYNTMDECSQTDLKLESKSVDCPSIEIDMVQNSWRKLRDCQTDLKQHATSEQIGAIEVAKLASGLSDLISEADLLFRNHQQKQCGIMEPPIFLADDATFSWYDEQMMMSTVAEHGFCFYAKHIVDAGSKFGFENRVDVTSEMLASTTNIMALGKLSRQDHTKTMSNYTKELLEVNNTRNDKKSMQYNERRPSLFNVIRSIVPKRSSSTIKGIAFNDVLSSLRQISISEGFRMSQGVKNMRKGRRSARHYLSRGKMMLSPEDISLVCEGDLYRKIYSQYAANMENITVHD 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04030 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 607 IPR027417 -
Vifa3g04030 1188 MobiDBLite consensus disorder prediction 1 64 - -
Vifa3g04030 1188 MobiDBLite consensus disorder prediction 1 48 - -
Vifa3g04030 1188 Gene3D - 287 542 IPR027417 -
Vifa3g04030 1188 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 546 607 - -
Vifa3g04030 1188 Gene3D - 544 607 - -
Vifa3g04030 1188 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 14 1173 IPR004582 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04030 Vifa-Chr3 1188923195 1188930987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04030 286 589 Core DNA Replication Machinery Family AT5G22010 22.727 7.03e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04030 K26118 - gmx:100815984 1269.22