Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04029 ATGAACAACCCCTGCGATCTCGCCACACCTAATTCCCAATCAGTACCTGAACAAACCGAAGAGTTTCAACCATCATGTGCCCCCAAAACCACCAACAAGAAGAGGAAGTCACCAGGATTAACCACTCCTGTGAAGAAATCCTCCAGGAATAATACGCCGAGGAAAAAAGTTTTGGGTGATGGTGTTAAGGGGAGTACTTTGCCTAATGGATTTAGGAAAATTGATTTGCGGTTGGAGGCAAAATTGTCAGCTGAGGAAAATTCAAAGATGTTTGCGGGACGGCAAATACATCCGTTCTTTTCATCGTGGAAGGTGGAGAAGAAATCTAGGGATTCAGCTGGTTCAGAAGGCTGTTTGTCTGATGCTAAGGGGGAGAGTAGAAGAACTATCTGCGGTCCTATTCATGTATTTGAAGAGATTCGGGATTATACTTCATCTCTTGACTGGAGTGGCTGGAAATTTTCGGGAAATACCACTGTTGTAGATTGTGGTCCAGAAAGTTCAAATTTATCTGTTATGGAGGGTTCTGTTGAACCCTTAAATTTTGATAACTTTCTTAGAGGTGTGAAACCCTCAAGCGCTTCAATTTCTCAGAATGCAGTGTCTTATTCAGATAAGCTATCTACACTATCAGAAAATATGAAGGAAATGTCACCAGAAAACTCAGCTGTGCTAGCTAATGACCAAACAACATGCACTTTAAAGCCGGAAGATGGCATAGTGGACTTGGAGGTGAACGATGACAGTACTGTATCTGGGCAAGCATGCATTTTTGGAAAATCAGATGCCAAGCCACCGAGTATGTTTCTTCGAGAAAGAATGAACTCTTTCTGCCATAGTTGTGAAGATAATGCTGAGAGCAGCTTATGGATACACAAGTACAAACCAACAAAAGCCTCGGAGGTATGCGGTAATAATGAATCCCTGAAATTCTTGCGTGACTGGTTACATCTTTGGCATGAAAGACGTTATCAAAACAGAAAGGGTTCCTCTAACAAGGATCATATTGGCATACCAAATGTTGATAGTGAGTATAACTGTCCTGATGATAACCATGCTTCAAAAGATGAGGGTTCCCTGAAGAATGTTCTTTTAATTACAGGACCAGTTGGGAGTGGCAAGTCTGCAGCTGTATATGCTTGTGCCCGAGAGCAAGGGTTTGAAGTTTTAGAGCTCAATGCATCAGACTGGCGAAATGGGGCTGCTGTCAAGCAGTATTTTGGAGACGCTCTTGGATCACACTGTGTCAAAGGGTTAGTGAAACATTCTGTCAGTTTAGAGAAGAAAAGTATGAAATTGCTCCCAGCTCCAGCTTCACCTAATGTGAAAGCAGCTGAAGAGATGGCTGATGATGTGATTGAAATGATAGCCATATCCGATGATGGAACTCATAGTCCTGGTGGAACATCTCAGAAGTTGCACGATATTAATGATGAACTTGCATCTGATACTGTCCAAACTTTAATTCTAGTTGAGGATGTTGACATCCTTTTTCCTGAAGACCGTGGATGTATTGCTGCCATACAACACATTGCTGAGACAGCAAAAGGGCCAATTATACTGACCAGCAACAGTAATAATGCTAGCCTGCCAATTAATCTCTGTCGACAACGTGTTTCTTTCTCATTGCCATTGCCGGATGAGTTGCTTCGCCATTTGTTCATGGTTTGTGGCACAGAAGAAGTTAACTTCAATCCTCTTTTACTAGAGAAGTTTATCCAGTCTTGTGACAGAGATATTCGTAAAACCATTATGCATCTTCAGTTCTGGCTGCAGAATAAAAAATATAGCACAGACAAGAAAGTGCAGACACTATATGGCTCACTTCCTTTTGATCTTGAGGCTGGTCATAAGATACTACCAAAGATGATACCGTGGAGTTTTTCCTCTGAGTTATCCAAACTAATTGATAATGAAGTTTCCAAGTCAATAATCATAGCAGAAAATAACTCAAGATGGGAAGGGTTAGTTAACGAAGAGCTTTGCATAAATGACGAGCAAAATAGCTTAGATGTGCAGTGTACAGGAACTGTTTATTTAGAGCCCAAGATAGAGGTCATGAAGAGAATTGAACCTATTACAGACTGCAGTGAGTTTGATAGTCAATATAGTGCTATCACTGAGCTTAGTAATTGTTCTGGTTCCCCAGTAACATCCTCTTTGCAAAAGGACCAAGGTCAACTTTTTGTGATGTCCTCTGTTGATATGGATAAGGGTCCAAATAATAGGCATTCTGTAAATGTTCATGACGAAGCTTACACGAGACAAACCCATGAAGGCAACGCTGAATCTTTCTTTAAGTTTCTATTGAATCAAAGCTATGCCAACATGTCTTTTTGCGAGCTGCTGCATTCTAGTTTGGAAGATTCAGAGGAGGAACATTGTAAATATTTGGAAACAACTTATGATGCATGCTTAAACAAAACACACAAATCACCTGATCTGTCCCGTTTTCCAGAACCAAGTTTTGTTTCTGAGACTGCAAAATCTGAAGTAGTGTCTTCTGGGCAGCTTGCCTGTCCAGTAGATGTTTCTCTGGATAATGAACTGAAACCATTCTCTTTCAGGGTTTGTCAGAACTTGGCCGAAGTGCCTAAAGATCCAGATTTGTTGGTGAATACTGAAATTCCCAAATCTTCTCCAAGAGCAACTTCACAAGATCTTACTGATGTGAACATGGAAATTGCATCTGCATCTGTTTATAACACGATGGATGAGTGCAGTCAAACTGATTTAAAGTTGGAGTCAAAGTCTGTTGACTGTCCATCTATTGAGATAGATATGGTGCAAAATTCGTGGAGGAAACTTCGTGATTGTCAAACAGATTTAAAACAGCATGCCACCTCAGAACAGATAGGTGCTATCGAAGTTGCTAAACTTGCTAGTGGGCTGAGCGATCTAATTTCAGAAGCTGACTTGTTGTTTCGTAATCACCAGCAAAAACAGTGTGGTATTATGGAACCTCCAATTTTCCTGGCTGATGATGCCACATTTAGTTGGTATGATGAGCAAATGATGATGTCAACTGTTGCTGAACATGGTTTCTGCTTTTATGCCAAGCATATAGTTGACGCGGGATCCAAATTCGGTTTTGAGAACAGGGTAGACGTAACTTCAGAGATGTTGGCTTCTACTACAAATATTATGGCTTTGGGGAAGTTGTCTAGACAGGACCACACCAAAACAATGAGTAACTATACTAAAGAGCTATTAGAGGTGAACAACACAAGAAATGATAAAAAGAGACCATCTCTGTTCAATGTGATCCGATCCATTGTTCCTAAAAGATCATCATCTACAATTAAAGGCATTGCATTCAACGATGTTCTTTCTTCACTACGCCAAATTTCAATTTCAGAGGGTTTCCGCATGTCACAAGGTGTTAAAAACATGAGAAAAGGAAGGCGAAGTGCTCGACATTATTTGAGCAGAGGTAAAATGATGTTATCTCCTGAGGATATATCATTGGTGTGTGAAGGTGACTTGTACAGAAAGATATACTCACAGTATGCTGCTAACATGGAAAATATAACAGTACATGATTGA 3546 0.4047 MNNPCDLATPNSQSVPEQTEEFQPSCAPKTTNKKRKSPGLTTPVKKSSRNNTPRKKVLGDGVKGSTLPNGFRKIDLRLEAKLSAEENSKMFAGRQIHPFFSSWKVEKKSRDSAGSEGCLSDAKGESRRTICGPIHVFEEIRDYTSSLDWSGWKFSGNTTVVDCGPESSNLSVMEGSVEPLNFDNFLRGVKPSSASISQNAVSYSDKLSTLSENMKEMSPENSAVLANDQTTCTLKPEDGIVDLEVNDDSTVSGQACIFGKSDAKPPSMFLRERMNSFCHSCEDNAESSLWIHKYKPTKASEVCGNNESLKFLRDWLHLWHERRYQNRKGSSNKDHIGIPNVDSEYNCPDDNHASKDEGSLKNVLLITGPVGSGKSAAVYACAREQGFEVLELNASDWRNGAAVKQYFGDALGSHCVKGLVKHSVSLEKKSMKLLPAPASPNVKAAEEMADDVIEMIAISDDGTHSPGGTSQKLHDINDELASDTVQTLILVEDVDILFPEDRGCIAAIQHIAETAKGPIILTSNSNNASLPINLCRQRVSFSLPLPDELLRHLFMVCGTEEVNFNPLLLEKFIQSCDRDIRKTIMHLQFWLQNKKYSTDKKVQTLYGSLPFDLEAGHKILPKMIPWSFSSELSKLIDNEVSKSIIIAENNSRWEGLVNEELCINDEQNSLDVQCTGTVYLEPKIEVMKRIEPITDCSEFDSQYSAITELSNCSGSPVTSSLQKDQGQLFVMSSVDMDKGPNNRHSVNVHDEAYTRQTHEGNAESFFKFLLNQSYANMSFCELLHSSLEDSEEEHCKYLETTYDACLNKTHKSPDLSRFPEPSFVSETAKSEVVSSGQLACPVDVSLDNELKPFSFRVCQNLAEVPKDPDLLVNTEIPKSSPRATSQDLTDVNMEIASASVYNTMDECSQTDLKLESKSVDCPSIEIDMVQNSWRKLRDCQTDLKQHATSEQIGAIEVAKLASGLSDLISEADLLFRNHQQKQCGIMEPPIFLADDATFSWYDEQMMMSTVAEHGFCFYAKHIVDAGSKFGFENRVDVTSEMLASTTNIMALGKLSRQDHTKTMSNYTKELLEVNNTRNDKKRPSLFNVIRSIVPKRSSSTIKGIAFNDVLSSLRQISISEGFRMSQGVKNMRKGRRSARHYLSRGKMMLSPEDISLVCEGDLYRKIYSQYAANMENITVHD 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04029 1181 Gene3D - 287 542 IPR027417 -
Vifa3g04029 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 607 IPR027417 -
Vifa3g04029 1181 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 14 1166 IPR004582 GO:0006281
Vifa3g04029 1181 Gene3D - 544 607 - -
Vifa3g04029 1181 MobiDBLite consensus disorder prediction 1 48 - -
Vifa3g04029 1181 MobiDBLite consensus disorder prediction 1 64 - -
Vifa3g04029 1181 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 546 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04029 Vifa-Chr3 1188923195 1188930987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04029 286 589 Core DNA Replication Machinery Family AT5G22010 22.727 6.09e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04029 K26118 - gmx:100815984 1276.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04029 3 1188923195 1188930987 Vifa3g04029 3 1188923195 1188930987 ECH