Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04021 ATGATCAAAGGGATACGCAAATTGAAGCCTTACCTTGCTATGGTGTCCCTTCAATTTGGTTATGCAGGAATGTATATCATCACTATGGTTTCATTCAAGCATGGCATGAGTCATTGGGTTCTCTCCGTTTACCGTCATATTGTCGCTACTATCTTCATGGCTCCCTTCGCCCTCGTCCTCGAAAGAAAAATTAGGCCAAAGATGACTCTCCCAATTTTCTTGAGGTTGGCTGTTCTTGGTTTCCTTGAACCAGTGCTTGATCAAAATTTGTACAACCTTGGAATGAAGAATACTTCAACAACGTTTGCATCTGCCACTGTCAACATTCTCCCAGCTATTACTTTTATAATGGCAATCATTTTCAGGTTGGAAACAGTGAACTTTAGAAAAATCCACAGTGTAGCAAAGGTTGTTGGAACAGTTGTAACTGTATCAGGTGCAATGGTTATGACATTGTACAAAGGCCCTGCATTTCAAATCATAAAGGGTCATGAAGGAAGTCAACATGAAAGTGGAAGCACTGAACCCTCTGAACAAAATTTTGTGCTTGGTACTATTATGCTCATTTCAAGTTGTGGCGGTTGGGCTAGTTTCTTTATCTTGCAATCTTTTACTCTGAAGATGTATCCGGCGGAGCTTTCTATGACGGCATGGATTTGCTTCTTGGGTATATTTGAAGGTGGAATTGCAACTTTGATATTTGAACGTGACATGAGTGTATGGTCATTAGGGTTTGACTCTAGGCTTCTTGCTTGTGTTTACTCTGGTATTGTGTGCTCTGGAATGGCTTACTATATTCAAGGTGTTGTGACTAGGGAACGTGGACCTGTGTTTGTTACTTCTTTCAGTCCTTTGTGTATGATCATCACAGCTGCATTGGGTTCTATTGTCTTAGCTGAACAAACTCATTTGGGAAGTATAATTGGAGCTATTATCATTGTGTGTGGACTATACACTGTGGTATGGGGGAAAAGCAAAGATAGTGTGAATACAATTGAAGCAACACAAAGTGAGGGACAGGAGTTGCCAATAAAGGATGGAACAAGAGCACAGTCAGACATTTTTGAAAGTGTTGAGGTTAATGTTCCTAAGGTTGGAGGAAAGAACAGTGGCAAACCATAA 1122 0.4055 MIKGIRKLKPYLAMVSLQFGYAGMYIITMVSFKHGMSHWVLSVYRHIVATIFMAPFALVLERKIRPKMTLPIFLRLAVLGFLEPVLDQNLYNLGMKNTSTTFASATVNILPAITFIMAIIFRLETVNFRKIHSVAKVVGTVVTVSGAMVMTLYKGPAFQIIKGHEGSQHESGSTEPSEQNFVLGTIMLISSCGGWASFFILQSFTLKMYPAELSMTAWICFLGIFEGGIATLIFERDMSVWSLGFDSRLLACVYSGIVCSGMAYYIQGVVTRERGPVFVTSFSPLCMIITAALGSIVLAEQTHLGSIIGAIIIVCGLYTVVWGKSKDSVNTIEATQSEGQELPIKDGTRAQSDIFESVEVNVPKVGGKNSGKP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04021 373 PANTHER WAT1-RELATED PROTEIN 10 333 IPR030184 GO:0016020|GO:0022857
Vifa3g04021 373 Pfam EamA-like transporter family 22 143 IPR000620 GO:0016020
Vifa3g04021 373 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020
Vifa3g04021 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 325 - -
Vifa3g04021 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04021 Vifa-Chr3 1185901885 1185905426 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04021 5 346 Nodulin-like Gene Family AT1G44800 65.889 3.95e-169 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04021 - - tpra:123903307 669.077