Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04017 ATGGGTGAGTTAACATGTTGTGAGAAAGTTAATGCATGGTTGAGAAACTCAAAGGCTTATTTGCTTATAATAAGCTTGCAATTTGGTTCTGCTGGCATGTATGTTCTCACTATGGCTGCTCTTAATAAGGGAATGAGTCATTATGTTTTTGTGGTTTATCGTAATGTTATTGCCACTGTTGCTCTTGCTCCATTCGCATTTTTTCTCGAAAGGAAAATTAGGCCAAAGATGACCGTGCGTATATTTTCAGAAATTATGGCACTGGGATTTGTCGAGATAATACTTGATCAATGTTTCACGTACTTGGGAATGAAGCTAACATCAGCATCCTTTGCATCTGCTGTTATGAATTCCGTACCTTCCATCACCTTCGTACTTGCAATCTTATTTAGATTGGAGAGGATGAAACTTAGAGAGATAGGATGTCAAGCGAAAGTGATTGGTACAGTGGTGAGTCTTGGAGGTGCTTTTCTAATGGCATTATACAAAGGTCCTGTTCTTCAAATTACTGGCTCTTCAGCAGCAACACAGATGCACCAACCTGAAAATGTCAATGATCCCACCGGTTCACACTGGCTTCTTGGTGGAGTGTTCCTCCTCGTTGGTTGCGCTGGTTTCTCTGCTTTCTACATTTTACAAGCCATAACATTAAAAAAGTATCCAGCAGAAATGTCTCTTGCCACGTGGGTTTGTTTTGTTGGTACACTTCAAAGCAGTGTAGTAACTATTTTCATAGAACGCCATAATCTTGAAGCATGGGCTTTGGGCCTCGACTCTAGACTCTTCGCTTCAGCATATGCGGGTATAGTAACTTCAGCATTTCAATTTTATGTGCAAGGTTCTGTAATTAAAACTATGGGACCTGTTTTCGTGACCGCTTTTAATCCTCTTCGAATGATCATAGTCACTGCCTTAGCTTGTATTCTACTCTCTGAAAAAACTCCATCTCGGAAGCATTGTTGGAGGAGTGGTGGTGGTCATAGGACTATATCTTGTTGTATGGGGCAAATGGAAGGAACAAAAAAGTATCAAGTTAGAGGAAGAGTCCCCGCAAAAAATCTCCCAGCAAGGACAACAACAATTGCCGATTACAGACTCAAAAATTGA 1107 0.4065 MGELTCCEKVNAWLRNSKAYLLIISLQFGSAGMYVLTMAALNKGMSHYVFVVYRNVIATVALAPFAFFLERKIRPKMTVRIFSEIMALGFVEIILDQCFTYLGMKLTSASFASAVMNSVPSITFVLAILFRLERMKLREIGCQAKVIGTVVSLGGAFLMALYKGPVLQITGSSAATQMHQPENVNDPTGSHWLLGGVFLLVGCAGFSAFYILQAITLKKYPAEMSLATWVCFVGTLQSSVVTIFIERHNLEAWALGLDSRLFASAYAGIVTSAFQFYVQGSVIKTMGPVFVTAFNPLRMIIVTALACILLSEKTPSRKHCWRSGGGHRTISCCMGQMEGTKKYQVRGRVPAKNLPARTTTIADYRLKN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04017 368 Pfam EamA-like transporter family 18 160 IPR000620 GO:0016020
Vifa3g04017 368 Pfam EamA-like transporter family 195 314 IPR000620 GO:0016020
Vifa3g04017 368 PANTHER WAT1-RELATED PROTEIN 21 314 IPR030184 GO:0016020|GO:0022857
Vifa3g04017 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04017 Vifa-Chr3 1184612562 1184614576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04017 14 312 Nodulin-like Gene Family AT1G21890 49.837 3.88e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04017 - - gmx:100813852 500.36