Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04016 ATGGGTGAATTAACATGTTGTGAGAAAGTTAATGCATGGCTGAGAAACTCAAAGGTTTATTTGCTTATAATAAGCTTGCAATTTGGTTCTGCTGGCATGTATGTTCTCACCATGGATGCACTTAATAAGGGAATGAGTCATTATGTTTTTGTGGTTTATCGTAATGTTATTGCCACTGTTGCTCTTGCTCCATTCGCATTTTTTCTCGAAAGAAAAATTAGGCCAAAGATGACTGTGCGAATATTTTCGGAAATTATGGCACTGGGATTTGTCGAGATAATACTCGATCAGTGTTTTACGTTTTTGGGAATGAAGCTAACATCAGCATCCTTTGCATCTGCTGTTATGAATTCCGTACCTTCCATCACCTTTGTACTTGCAATCTTATTTAGATTGGAGAGGATGAAACTTAGAGAGATAGGATGTCAAGCTAAGGTGATTGGCACAGTGGTGAGTCTTGGAGGTGCTTTTCTAATGGCACTATACAAAGGTCCCGTTCTTCAAATTGTTGGCTCTTCAGCAGCAACACAGATGCACCAACCTGAAAATGTCAATGATCCAACTGGTTCACACTGGCTTCTTGGTGCATTGTTTCTTCTTATCGGTTGTGCTGGCTTCTCTGCTTTCTACATTTTACAAGCCATAACATTAAGAAAGTATCCAGCAGAAATGTCTCTTGCCACGTGGGTTTGTTTCATTGGGGCACTTCAAAGCAGCGCAGTAACTATTTTCATGGAACGTCACAGCCCGGAAGCTTGGGCCTTGGGCCTGGACTCTAGACTCTTCGCTTCGGTATACGCGGGAATAGTTACATCAGCAATCCAATTTTACGTGCAAGGTTCTGTAATTAAAACTATGGGACCTGTTTTCGTGACCGCTTTTAATCCTCTTCGTATGATCATAGTCACGGCTTTAGCTTGTATTGTCCTCTCAGAAAAACTTCATCTCGGAAGTATTGTTGGAGGAGTTGTTGTGGTTACAGGACTATATCTTGTTGTATGGGGCAAATCGAAGGAACAAAAAAGTATCATGTTAGAGGAAGAGTCCCCACAAAAAATCTCTCAACAAGGACAACAACAATTACCGATTACAGTCTCAAAAATCGATGACAATGTTAATATTAATAAAGCTCAATTGGTCACGATTATAGATCCAACAAGTGCAGAGAGACAGTGA 1176 0.4048 MGELTCCEKVNAWLRNSKVYLLIISLQFGSAGMYVLTMDALNKGMSHYVFVVYRNVIATVALAPFAFFLERKIRPKMTVRIFSEIMALGFVEIILDQCFTFLGMKLTSASFASAVMNSVPSITFVLAILFRLERMKLREIGCQAKVIGTVVSLGGAFLMALYKGPVLQIVGSSAATQMHQPENVNDPTGSHWLLGALFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFIGALQSSAVTIFMERHSPEAWALGLDSRLFASVYAGIVTSAIQFYVQGSVIKTMGPVFVTAFNPLRMIIVTALACIVLSEKLHLGSIVGGVVVVTGLYLVVWGKSKEQKSIMLEEESPQKISQQGQQQLPITVSKIDDNVNINKAQLVTIIDPTSAERQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04016 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
Vifa3g04016 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 229 338 - -
Vifa3g04016 391 Pfam EamA-like transporter family 20 160 IPR000620 GO:0016020
Vifa3g04016 391 Pfam EamA-like transporter family 194 333 IPR000620 GO:0016020
Vifa3g04016 391 PANTHER WAT1-RELATED PROTEIN 20 346 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04016 Vifa-Chr3 1184534098 1184536158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04016 14 367 Nodulin-like Gene Family AT2G37460 45.676 1.97e-115 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04016 - - gmx:100813852 578.941