Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04007 ATGGAGGAGGAACGTTACAAGATATTGAGGGATCTTGGTTCAGGGAACTTTGGTGTGGCTAGGTTGGCCAAACACACCAGCACAGGAGAGCTTGTTGCTATCAAATATATTGAAAGAGGATATAAGATTGATGAGAATGTTCAAAGAGAGATAATTAACCATCAATCTTTAAGGCATCCAAATATCATCAGGTTCAAAGAGGTATTTGTGACACCTACTCATTTGGCTATTGTTCTTGAGTATGCTGCTGGTGGCGAACTTTTTGATAAGATATGTTCTGCTGGTCGATTCAGTGAAGATGAGGCAAGATATTTCTTCCAACAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATTTGTCATAGAGACTTGAAATTGGAAAACACTCTATTGGATGGAAGTCCAGTTCCTCAGCTTAAGATTTGTGACTTTGGTTTCTCCAAGTCTGCTATACTTCACTCTCAACCTAAATCAACAGTTGGAACACCTGCATACATTGCACCTGAGGTTTTGTCTCGAAAGGAGTATGATGGAAAGATTGCAGATGTATGGTCATGTGGTGTAACTCTTTATGTTATGTTAGTTGGATCATATCCATTTGAAGAACCAGATGATCCCAAAAATTTCAGAAAGATTATTGGGAAAATAACGAATGTTGAATACTCTATACCTGATTATATACGTATATCATCAGACTGTAGTCAACTTCTGTCTCGTATTTTTGTTGTCGATCCAACTAAGAGGATTACAGTGTTAGAGATAAAACAACACCCTTGGTTTTTGAAGAACATGCCTAGAGAAGTGGTGGAGAGTGATAGAAAATGTAGCAAGGAGTTAGAAAAAGAAGAAATAGCAAGTCAGAGTGTGGATGAAATTATGAGGATTGTACGAGAAGCAATGATTCCATATTCATGTTCAATAGATGTTGCTGGTGTTGATGAGATTGAAGAGGAGGTTGCCGACAGTGTTGGTGTGAGCATCTTCAAATCTGGTTATGTTCCTAGCCAACCAGATTTCAGAAAAGGAAAAGAAAAAAGACAGATGCTCTTAAGATTCAACATGTTTGTAACAAATGCTGCATTGAGAGGGAAAAGAAAAATGTCTGCTAGAAAGAAGCTCATCAGTTGGAATGGCATTGTGGATGAATCTCCAAAACATTATTGA 1170 0.3778 MEEERYKILRDLGSGNFGVARLAKHTSTGELVAIKYIERGYKIDENVQREIINHQSLRHPNIIRFKEVFVTPTHLAIVLEYAAGGELFDKICSAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPVPQLKICDFGFSKSAILHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGSYPFEEPDDPKNFRKIIGKITNVEYSIPDYIRISSDCSQLLSRIFVVDPTKRITVLEIKQHPWFLKNMPREVVESDRKCSKELEKEEIASQSVDEIMRIVREAMIPYSCSIDVAGVDEIEEEVADSVGVSIFKSGYVPSQPDFRKGKEKRQMLLRFNMFVTNAALRGKRKMSARKKLISWNGIVDESPKHY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04007 389 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04007 389 ProSiteProfiles Protein kinase domain profile. 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04007 389 SUPERFAMILY Protein kinase-like (PK-like) 4 301 IPR011009 -
Vifa3g04007 389 FunFam Serine/threonine-protein kinase SRK2E 82 270 - -
Vifa3g04007 389 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Vifa3g04007 389 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Vifa3g04007 389 PANTHER SERINE/THREONINE KINASE 4 294 - -
Vifa3g04007 389 Gene3D Transferase(Phosphotransferase) domain 1 82 270 - -
Vifa3g04007 389 FunFam Aurora kinase A 1 85 - -
Vifa3g04007 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vifa3g04007 389 SMART serkin_6 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04007 Vifa-Chr3 1181534281 1181536499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04007 5 265 CBL-interacting serine-threonine protein kinases AT4G24400 45.556 3.76e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa3g04007 Pkinase 2.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04007 K14498 - gmx:100817713 508.064