Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03988 ATGGCGAGAGGATTGAAAGTTCTATCAGCTCTCGACTCAGCAAAAACACAATACTACCATTTCAAAGCCATCATCATAGCAGGGATGGGACTTTTCTCAGACTCTTATGATCTCTTCTCCATAACTCTCATCACAAAGATGCTCGGAAGAATATACTACTCCGACAAATCCAAAGTCCGACAAGTCAACCCTGTAGTCGTCTCCGCCCTCATCTCCGTCGCGCTACTAGGAACCGCGATAGGCCAGCTCGTATTCGGGCGGCTCGGAGACCTAAAAGGCCGGCGCCACGTCTACGGGATGGCCTTAATATTGATGATAATAAGCTCCTTAGCTTCTGGCTTCTCCATTTGTACAACAAAGAGAGCATGTGTTTTGCTCTCCCTTGGTTTCTTTAGATTCTTCTTGGGACTCGGGATTGGTGGCTTTGGTATATTGGCTAGTGCAACGGTTACTATGGTGGTTTGTTCGATATTTCGCCATGGTTCGAGGCCGGAGTTGCCTTCCGATGTGCCGCCGGAGGCGGATGTTGCATGGAGGTTGATATTAATGATTGGTTCTATTCCGGCGGCTTTGACTTATTACTGGCGTATGATGATGCCAGAAACTGCCAGATATACAGCATTAGTGGAACAAAATGTGTTGCAAGCTGCAAAGGACATGGAGAAAGTTCTAGATGTATCAATGAGCCAAATAGCCGAAGAAGATTCATCACCACCAAGCACAAATCCCGCATCATACCCTCTTCTTTCAAGAGAATTCTTGCATCGACACGGTCGCGATCTTTTTGCCTGTTCTGCTAACTGGTTTCTCTTGGACATAGTGTTCTACAGTCAAGTTCTTTTCCAAGGTGAAATATACAAGCGATACCTTAAGCCGAGTGACAAACACGATGTGTATCAAGAAGCATTCTATCTTGCAAGAATACAAGCCATTCTCGCTGTTTGTTCCACAATCCCGGGTTACTTCTTCACCGTCTACTTCATCGATCGCGTAGGACGAGTCAAGATTCAAATGATGGGTTTTTTCTTCATGGCAGTGTCGTTTTTCGCCATAGGGTTTCCATATTACTCTCATTGGACAAGTCCTGATAACCATAAGAATAAAGGGTTCATGGTTCTCTATGGACTTGCTTTCTTCTTTGCGAATTTCGGACCTAATACTACGACTTTTATTGTCCCGGCCGAACTCTTTCCGGCTAGGTTTCGGTCGACGTGTCATGGAATTTCGGGAGCTGTTGGTAAGGTTGGTGCAATCATTGGATCTGTTGGGTTTTTATGGGCTTCACATAATAAGAGGGAGGAAGGATATCCGGAGGGAATTGGAATGAAAGATTCACTTATCATACTTGGAGGGGTGTGTATAGTTGGAATGTTTGTTACTTACTTCTTCACCAAGGAAACTATGGGAAGGTCTTTGGAAGAGAATGAAGTTGAACAGTCTCATCATGGTGAAGAATATAATGATCTTTGA 1470 0.4449 MARGLKVLSALDSAKTQYYHFKAIIIAGMGLFSDSYDLFSITLITKMLGRIYYSDKSKVRQVNPVVVSALISVALLGTAIGQLVFGRLGDLKGRRHVYGMALILMIISSLASGFSICTTKRACVLLSLGFFRFFLGLGIGGFGILASATVTMVVCSIFRHGSRPELPSDVPPEADVAWRLILMIGSIPAALTYYWRMMMPETARYTALVEQNVLQAAKDMEKVLDVSMSQIAEEDSSPPSTNPASYPLLSREFLHRHGRDLFACSANWFLLDIVFYSQVLFQGEIYKRYLKPSDKHDVYQEAFYLARIQAILAVCSTIPGYFFTVYFIDRVGRVKIQMMGFFFMAVSFFAIGFPYYSHWTSPDNHKNKGFMVLYGLAFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAVGKVGAIIGSVGFLWASHNKREEGYPEGIGMKDSLIILGGVCIVGMFVTYFFTKETMGRSLEENEVEQSHHGEEYNDL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03988 489 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 468 IPR020846 GO:0022857
Vifa3g03988 489 SUPERFAMILY MFS general substrate transporter 11 476 IPR036259 -
Vifa3g03988 489 CDD MFS_PhT 24 467 - -
Vifa3g03988 489 Pfam Sugar (and other) transporter 143 476 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa3g03988 489 Gene3D MFS general substrate transporter like domains 19 488 IPR036259 -
Vifa3g03988 489 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 21 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03988 Vifa-Chr3 1177439388 1177449094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03988 5 478 Inorganic Solute Cotransporters AT1G76430 58.607 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03988 K08176 - gmx:100797683 699.123