Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03987 ATGGAAGCAAACAACCGAGATCAAATTGTGGATGTTGGATCGGTGGTTGAAGCTGTTTCTGCTGAGGCCGGTGATGCACCGCTTTACGCCCTCGAAAGCCTCTGCATGCGTTGTCATCAAAATGGAACTACAAGATTTTTGTTTACTTCAATTCCTAACTTCAGGAAGATTTTATTGTCGGCATTTGAATGTCCTCATTGTGGTGAGAGGAACAATGAAGTGCAGTTTGCTGGTGAAATTCAACCACGAGGTTGTTGTTACTCGCTAGAGATCCCAGTGGGTGAACAAAAGATGTTCAACCGACAAGTGGTAAAATCAGAATCTGCTACCATTAAGATACCCGAACTCGATTTTGAGATTCCACCAGAGGCACAGCGTGGTAGTCTGTCAACGGTTGAAGGGATACTAATGCGAGCTGCTGATGAACTTCAGGCCCTTCAAGAGGAGCGCAGAAAAGTTACTCCAGAGACGGCTGATGCAATAGATCAGTTCCTGGTGAAGTTGCGAGCCTGTGCCACAGCTGAATCTTCCTTCACGTTTATTATTGATGATCCTGCTGGAAACAGTTACATCGAAAATCCGTTTGCACCATCATCTGATCCATCACTCACTATCAAGTTTTATGAGCGAACTCCTGAGCAACAAGCATTGTTGGGATATTCTAAACAGAATGAAGGAACTCATGATGAAGTACTGGAAAGTGGAGAAGCAACGGCTTCTGGGAGAATGAGGAGGCAACCCCACGGGTCAGTTGGGGCAGCAGCTGGTCAACGAGCAATTGCGCAAAGTAATAGTGCAGAAATCGCAGATGCCTTATTTCGATATTCTGCACCAGAAGAGGTGATGACTTTCCCGTCTACTTGTGGAACTTGTACCGCTAAGTGTGAAACTCGAATGTTTGTTACCAATATTCCATATTTTCAAGAAGTAATCGTTATGGCATCTACATGTGATGCTTGTGGTTACCGCAACTCTGAGTTGAAACCAGGTGGACGAATTCCTGAAAAAGGAAAAAAAATTACTCTCTATGTGAAAAATATTAAGGACCTGAGCCGGGATGTGATTAAGTCTGATACTGCAAGTGTACAAGTCCCTGAACTTGACTTGGAGCTGGCAAGTGGCACCATGGGAGGACTTGTTACAACTGTTGAAGGTTTAATTACACAAATCGGTGAGAGCCTTAAAAATGTTCATGGGTTTAGTCTTGGAGACAGTCTTGATGAACATAAAAGAAGCAAGTGGCTAGACTTTCAAGCAAGACTAAGCAAGCTTCTTAGCTTGGAAGAAGCTTGGACTCTAATTCTTGATGATGCATTGGCTAATTCTTTCGTAGCACCCGCAACAGATGATCTAAAAGACGACAAACAATTAACATTTGAAGAGTATGAGAGGTCATGGGAACAAAATGAAGAGCTAGGTCTGAATGATATTGACACCTCTTCTGCGGATGCTGCTTATGAATCAACAAACACTACTAAGATTGATTGA 1488 0.4315 MEANNRDQIVDVGSVVEAVSAEAGDAPLYALESLCMRCHQNGTTRFLFTSIPNFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEIPVGEQKMFNRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQALQEERRKVTPETADAIDQFLVKLRACATAESSFTFIIDDPAGNSYIENPFAPSSDPSLTIKFYERTPEQQALLGYSKQNEGTHDEVLESGEATASGRMRRQPHGSVGAAAGQRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGTCTAKCETRMFVTNIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKKITLYVKNIKDLSRDVIKSDTASVQVPELDLELASGTMGGLVTTVEGLITQIGESLKNVHGFSLGDSLDEHKRSKWLDFQARLSKLLSLEEAWTLILDDALANSFVAPATDDLKDDKQLTFEEYERSWEQNEELGLNDIDTSSADAAYESTNTTKID 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03987 495 FunFam Zinc finger protein ZPR1 277 331 - -
Vifa3g03987 495 Pfam ZPR1 zinc-finger domain 286 444 IPR004457 GO:0008270
Vifa3g03987 495 Pfam ZPR1 zinc-finger domain 33 192 IPR004457 GO:0008270
Vifa3g03987 495 Coils Coil 129 149 - -
Vifa3g03987 495 Gene3D ZPR1, A/B domain 79 220 IPR042451 -
Vifa3g03987 495 Gene3D ZPR1, A/B domain 332 474 IPR042451 -
Vifa3g03987 495 PANTHER ZINC FINGER PROTEIN ZPR1 13 489 IPR040141 -
Vifa3g03987 495 FunFam zinc finger protein ZPR1 79 220 - -
Vifa3g03987 495 FunFam Zinc finger protein ZPR1 23 78 - -
Vifa3g03987 495 NCBIfam ZPR1 zinc finger domain 35 223 IPR004457 GO:0008270
Vifa3g03987 495 NCBIfam ZPR1 zinc finger domain 287 478 IPR004457 GO:0008270
Vifa3g03987 495 Gene3D ZPR1, zinc finger domain 276 331 IPR042452 -
Vifa3g03987 495 Gene3D ZPR1, zinc finger domain 25 78 IPR042452 -
Vifa3g03987 495 FunFam Zinc finger protein ZPR1 332 474 - -
Vifa3g03987 495 SMART zpr1 286 446 IPR004457 GO:0008270
Vifa3g03987 495 SMART zpr1 33 193 IPR004457 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03987 Vifa-Chr3 1177280399 1177298390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03987 4 494 C2H2 Transcription Factor Family AT5G22480 75.904 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03987 K06874 - gmx:100798741 835.484