Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03986 ATGGCCCCTCCAAAAGGTGAGAAGAAGGCTGATCCAAAGGCACATGCCTTGAAAGCTGCTAAGGCAGTCAAGTCGGGCTCTGCTATTAAGAAGAAGGCGAAGAAGATCCGAACAACTGTCACTTTCCATCGCCCGAAGACCCAAACTAAGGACCGAAATCCTAAGTACCCTCGCATTAGTGCCACCCCTAGGAATAAACTTGATCACTACCAGATTTTGAAGTTCCCACTCACCACTGAATCTGCCATGAAGAAAATTGAGGATAACAACACTTTGGTCTTCATTGTGGATTTGCGTGCTGATAAGAAGAAGATTAAGGATGCAGTCAAGAAAATGTATGACATCCAGGCCAAGAAGGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTTAGGTTGACTCCTGATTACGATGCGTTAGATGTTGCAAACAAGATTGGCATTATCTAA 459 0.4488 MAPPKGEKKADPKAHALKAAKAVKSGSAIKKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03986 152 Pfam Ribosomal protein L23 72 134 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifa3g03986 152 MobiDBLite consensus disorder prediction 25 41 - -
Vifa3g03986 152 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifa3g03986 152 MobiDBLite consensus disorder prediction 1 61 - -
Vifa3g03986 152 MobiDBLite consensus disorder prediction 1 18 - -
Vifa3g03986 152 ProSitePatterns Ribosomal protein L23 signature. 130 145 IPR001014 GO:0019843
Vifa3g03986 152 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 69 145 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vifa3g03986 152 Gene3D - 33 152 IPR012677 -
Vifa3g03986 152 Hamap 50S ribosomal protein L23 [rplW]. 72 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifa3g03986 152 FunFam 60S ribosomal protein L23a 31 152 - -
Vifa3g03986 152 Pfam Ribosomal protein L23, N-terminal domain 13 61 IPR005633 -
Vifa3g03986 152 NCBIfam 50S ribosomal protein L23 76 152 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03986 Vifa-Chr3 1176444956 1176445722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03986 25 152 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 90.625 5.35e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03986 K02893 - cit:102620310 234.572