Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03980 ATGTACGATGGAATAGAAGATTTTTTACGCGGGGACAATAGCATAATACCTATAAGGTACTCTTACAAAGACATAAAAAAGATGACAGAACAATTCAAGACAAAACTTGGCAATGGAGGTTATGGATCTGTTTTCAAAGGACAACTTCGAAGTGGTCGTCTTGTAGCAATCAAGTTATTAGATAAAGGCAAGTCCAATGGGCAAGATTTTATAAATGAAGTTGCTACCATTGGTAGAATTCACCATGTTAACGTGGTACATCTTATTGGTTTTTGTGTGGAGGGTTCAAAACGCGCTCTTATATATGAATTCATGCCAAAAGGGTCACTCGAAAAATATATATTTTCTCATATTGAAGAGGGATATTCCTTGAGTTGCGAAAAGTTGTATGTGATATCTGTTGGAGTGGCTCGAGGTATTCAGTATTTGCATAATGGATGCAATATGAAAATCTTACACTTTGACATAAAGCCTCACAACATCCTTCTAGATGAGGATTTCAATCCAAAAGTTTCTGATTTTGGATTAGCAAGACTTTGCCCTACAGATAAAAGCATTGTGTCACTAACTGCTGCTAGAGGAACCATCGGATACATGGCCCCTGAACTATTTTACAGAAATGTTGGCACAATATCTTACAAAGCTGATGTTTATAGCTTTGGGATGTTGTTAATGGAGATGGCTAGTAGAAGAAAGAACTTGAATGCATTGACCCAGCAATCTAGTCAAATTTATTTCCCTTTTTGGATTTATGATCAGTTACATGATGGAAGAGAAGTAACAATTGAAAATGACACGGATCAAGAAATAAAATTGGCAAAGAAAATGATGATTGTTGCTTTGTGGTGTATACAGACAAAACCTGAGGACCGTCCTTCAATGGATAAAGTGTTGGAGATGCTTGAAGAAGAAGACGGGGAGTTGCCAATGCCTAATAAACCATACTTTTGTCTACAAGATGAACCAGTAATAGGTGTTAGAGATGATAATACTAGCAGCTCATGGACTACATATAGTACATCTGTAGGTGATTCCAAGATACTAACCTGA 1050 0.3676 MYDGIEDFLRGDNSIIPIRYSYKDIKKMTEQFKTKLGNGGYGSVFKGQLRSGRLVAIKLLDKGKSNGQDFINEVATIGRIHHVNVVHLIGFCVEGSKRALIYEFMPKGSLEKYIFSHIEEGYSLSCEKLYVISVGVARGIQYLHNGCNMKILHFDIKPHNILLDEDFNPKVSDFGLARLCPTDKSIVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALTQQSSQIYFPFWIYDQLHDGREVTIENDTDQEIKLAKKMMIVALWCIQTKPEDRPSMDKVLEMLEEEDGELPMPNKPYFCLQDEPVIGVRDDNTSSSWTTYSTSVGDSKILT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03980 349 Pfam Protein kinase domain 32 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03980 349 SMART serkin_6 30 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03980 349 FunFam serine/threonine-protein kinase PBS1-like 6 104 - -
Vifa3g03980 349 Gene3D Transferase(Phosphotransferase) domain 1 105 308 - -
Vifa3g03980 349 ProSiteProfiles Protein kinase domain profile. 30 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03980 349 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Vifa3g03980 349 SUPERFAMILY Protein kinase-like (PK-like) 14 302 IPR011009 -
Vifa3g03980 349 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Vifa3g03980 349 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 323 IPR045874 GO:0004672
Vifa3g03980 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vifa3g03980 349 FunFam PR5-like receptor kinase 105 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03980 Vifa-Chr3 1174006293 1174007342 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03980 19 334 Receptor kinase-like Gene Family AT5G38280 49.379 4.69e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g03980 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03980 - - psat:127093935 583.178