Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03978 ATGTATGAAGGCATTGAAGATTTTCTCCGTAGTGATAATAACATTGTGCCTATAAGATACTCCTACAGAGACCTAACAAATATAACAAAACAATTCCAGACCAAATTAGGCAACGGAGGTTATGGATCTGTTTTCAAAGGACAACTTCGAAGCGGTCGTCTTGTAGCAGTCAAATTATTAGACAAAGCAAAGTCCAATGATCAAGATTTTATAAATGAAATTGCTACTATTGGTAGGATTCACCATGTTAATGTGGTGCAACTCATTGGTTTTTGCGTGGAAGGGTCAAAACGCGCACTTATATATGAATTCATGCCAAATGGATCACTTGAAAAATACATATTTTTTCATATTGAAGAGAGTCTTTCATTGAGTTGTGAAAAATTGTACGCCATTTCTCTTGGAGTTGCTCGAGGCATTGAATACTTGCACAATGGATGCAATATGAAAATTCTACACTTTGACATAAAACCTCATAACATCCTTCTAGATGAGAATTTCAACCCAAAAGTTTCTGATTTTGGACTAGCTAGACTTTGTCCAACCAATAAAAGCGTTGTGTCATTAACTGCAGCAAGAGGAACCATTGGATATATGGCCCCTGAGCTATTCTACAAAAATGTTGGTACAATATCTCACAAAGCTGATGTATATAGCTTTGGGATGTTGTTAATGGAGATGGCAAGTAGAAGGAAGAACTTGAATGCATTGGCGGTACAATCTAGCCAAATATATTTTCCTTTTTGGATTTATGATCAATTACATGATGGAAGGGAAGTGACAATTGAGAATGGCACAGATCAAGAAATAAAATTGGCAAAGAAAATGATGATTGTGGCTTTATGGTGTATACAGACAAAACCTGAAGACCGTCCTTCAATGATTAAAGTGTTGGAGATGCTTGAAGAAGAAGATGGAAACATGCAAATTCCTAATAAACCTTACTTTTGTCTACAAGATGAACAAGTAGAAGATGTTAGAGATGATAATATTAGCGGCTCATGGACTTCATATGGTATATCAGTAAGTGATCCCAAGGAACCAATATGA 1050 0.359 MYEGIEDFLRSDNNIVPIRYSYRDLTNITKQFQTKLGNGGYGSVFKGQLRSGRLVAVKLLDKAKSNDQDFINEIATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIFFHIEESLSLSCEKLYAISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTNKSVVSLTAARGTIGYMAPELFYKNVGTISHKADVYSFGMLLMEMASRRKNLNALAVQSSQIYFPFWIYDQLHDGREVTIENGTDQEIKLAKKMMIVALWCIQTKPEDRPSMIKVLEMLEEEDGNMQIPNKPYFCLQDEQVEDVRDDNISGSWTSYGISVSDPKEPI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03978 349 FunFam serine/threonine-protein kinase PBS1-like 5 104 - -
Vifa3g03978 349 FunFam PR5-like receptor kinase 105 313 - -
Vifa3g03978 349 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Vifa3g03978 349 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 320 IPR045874 GO:0004672
Vifa3g03978 349 Gene3D Phosphorylase Kinase; domain 1 10 104 - -
Vifa3g03978 349 SMART serkin_6 30 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03978 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vifa3g03978 349 SUPERFAMILY Protein kinase-like (PK-like) 13 302 IPR011009 -
Vifa3g03978 349 Gene3D Transferase(Phosphotransferase) domain 1 105 313 - -
Vifa3g03978 349 ProSiteProfiles Protein kinase domain profile. 30 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03978 349 Pfam Protein kinase domain 33 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03978 Vifa-Chr3 1173926831 1173927880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03978 19 330 Receptor kinase-like Gene Family AT5G38280 50.000 2.07e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g03978 Pkinase 8.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03978 - - psat:127093935 580.867