Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03972 ATGAACAGTTGTTATTATGTTATGGGATTGTTGTTGTTCATGGTTTCCTTTGTTTTTGGAATAACAACAGCCACAACAGATTCCTTTTGCGGAAATCAAGCTATCAGATTCCCTTTCGGAATCAAAAACCATCAAGCACCATCGCGTGGCTACCCTGGCTTTGATTTGATTTGTTCATCAAACCAAACTATGATTCAACTTCCTCACTCAGTGAAACTCAATGTCGATAACATTGACTACAAACGCCAAACAATTCTACTTTCCGATCCACAAACTTGTCTTTACAAACAGATCAAAAACCTCAATATTTCATCCACTCCGTTCAACTACTTGAAACGTGACTATGATCATTTTGTTGACCATTACTTTTTCAACTGTTCACTTTTGATTAGAAATGGGTTAGATTCCTATTTGGTTCCATGTCTAAGCACTTCAACCTCTCAAACATATGCTATCCCTTCTGATACACTCATTGATGACCTTCCTCTCTCTTTTTGCACCAAAATGTTTAATGTTTCATTCAAACCTTCTGAATTTGTTCGTTTGATGTGGTCTCAGCCTGATTGTAAACACTGTGAATCAAAAGGAAACAGGTGTGGTTGGAACAATACTACACACTCCAAGAAAATCGACTGTTTCTCCAAAGGTTCATCAACGGCTTTACTCACCACAGGGTCAATTCTTGGATCTTTGTTTTTCATCTTGTTGACTGGTGCAGTTTACCATATTTATGACATTTACATACTAAAGAAAGCAAAACAAGCAATTATAGAAAGGTTTTTGGAAGACTATAGAGCTCTTAAGCCTACTAGATACTCTTATGTAGAAATTAAGAGAATCACTAATAATTTTGGAGACAAATTAGGAGAAGGAGCCTATGGAAGTGTGTATAAAGGAAGCATTTCAAAAGAGATTAATGTTGCTGTCAAAATACTAAACTTTTCTCAAGGAAATGGGCAGGACTTTCTCAATGAAGTTGGTACAATGGGTAGAATCCACCATGTTAATATTGCTCGATTGATCGGGTTTTGCGCCGATGGGTTTAAAAGAGCTCTTGTTTATGAATTTTTGCCAAATGGTTCATTGCAAAAGTTCATAAATTCACCGGATAATGAGAAAAACTTCCTTGGTTGGAAAAAAATGCACGAAATTGCTTTAGGAATAGCTAAAGGAATTGAGTATCTTCATCAAGGGTGTGATCAACGCATCCTCCATTTTGATATCAAGCCGCAAAACGTGTTACTTGACCATAACTTCATTCCAAAAATAAGTGATTTTGGTCTAGCTAAATTATGTTCTAGGGATCAGAGCATAGTGTCGATGACTACAGCTAGAGGAACTTTGGGCTATATTGCTCCCGAAGTTTTTTCAAGAAACTTTGGAAATGTGTCTTACAAATCAGATGTTTATAGTTATGGAATGATGTTGCTTGAAACAATAGGAGGAAAGAAGATCACGGAGGATTTAGAGAAAAACACTAGTCATGTTCACTATCCAGAATGGATTCATAATCTGTTAGATGACCAAGAGGAAATGAGAATTCATGTTGATGATCAAGAGGATGAAAAAACTGTTAGGAAAATGGCGATTGTGGGACTTTGGTGCATTCAATGGCATGCAATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTGGAAGGAGATGAAGACAAAACTCCAATACCTCCCAATCCTTTTGCTTCTCAGTCTAGACGACCTAGAAGAAATGGTTCAATTGCAAGACAACTAACACAAGATTTAGATGTAATTGAAGAGTTAGATTAA 1788 0.3669 MNSCYYVMGLLLFMVSFVFGITTATTDSFCGNQAIRFPFGIKNHQAPSRGYPGFDLICSSNQTMIQLPHSVKLNVDNIDYKRQTILLSDPQTCLYKQIKNLNISSTPFNYLKRDYDHFVDHYFFNCSLLIRNGLDSYLVPCLSTSTSQTYAIPSDTLIDDLPLSFCTKMFNVSFKPSEFVRLMWSQPDCKHCESKGNRCGWNNTTHSKKIDCFSKGSSTALLTTGSILGSLFFILLTGAVYHIYDIYILKKAKQAIIERFLEDYRALKPTRYSYVEIKRITNNFGDKLGEGAYGSVYKGSISKEINVAVKILNFSQGNGQDFLNEVGTMGRIHHVNIARLIGFCADGFKRALVYEFLPNGSLQKFINSPDNEKNFLGWKKMHEIALGIAKGIEYLHQGCDQRILHFDIKPQNVLLDHNFIPKISDFGLAKLCSRDQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGKKITEDLEKNTSHVHYPEWIHNLLDDQEEMRIHVDDQEDEKTVRKMAIVGLWCIQWHAMDRPSMQMVVQMLEGDEDKTPIPPNPFASQSRRPRRNGSIARQLTQDLDVIEELD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03972 595 PANTHER RUST RESISTANCE KINASE LR10-RELATED 254 571 IPR045874 GO:0004672
Vifa3g03972 595 Coils Coil 591 595 - -
Vifa3g03972 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Vifa3g03972 595 MobiDBLite consensus disorder prediction 556 584 - -
Vifa3g03972 595 FunFam serine/threonine-protein kinase PBS1-like 250 356 - -
Vifa3g03972 595 MobiDBLite consensus disorder prediction 564 584 - -
Vifa3g03972 595 SUPERFAMILY Protein kinase-like (PK-like) 266 554 IPR011009 -
Vifa3g03972 595 SMART serkin_6 282 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03972 595 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Vifa3g03972 595 Gene3D Transferase(Phosphotransferase) domain 1 357 561 - -
Vifa3g03972 595 Pfam Protein kinase domain 285 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03972 595 ProSiteProfiles Protein kinase domain profile. 282 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03972 595 FunFam PR5-like receptor kinase 357 564 - -
Vifa3g03972 595 Pfam Wall-associated receptor kinase galacturonan-binding 28 89 IPR025287 GO:0030247
Vifa3g03972 595 Gene3D Phosphorylase Kinase; domain 1 258 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03972 Vifa-Chr3 1171275663 1171277530 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03972 30 570 Receptor kinase-like Gene Family AT1G66910 36.513 2.25e-111 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g03972 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03972 - - aprc:113873873 786.949