Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03969 ATGGATAACATTCTTGGTCTTCTCAAACTTCGTATCAAAAGTGGAATTAATATTGCAATTCGTGATGCTAATTCGAGCGACCCTTATGTTGTTGTGAACATGGGTGAACAGAAGCTGAGGACTCGTGTAGTGAAAAACAATTGCAACCCTGAGTGGAACGAAGAACTAACCCTTTCAATAAGTGATGTCCAAACTCCAATACATCTGACAGTTTTTGATAAAGACACGTTCTCTCTCGATGACAAAGTGGGTGATGCAGAGATAGACTTGAAGCCATATGCTCAAGCTGTACAAATGAAGTTGGATAGTCTTCCAGATGGTTGTGTAATCAAGAGGGTTCAAGCGGGTAGGACTAATTGCCTTGCTGAAGAGAGTAGTTGTATTTTGAAAGATGGGAAAATAATCCAAGAAATGATTCTAAGATTGAGAAATGTAGAGAGTGGGGAATTGGTTGTGGAAATTGAATGGGTGGATATTCCAGGCTGTAGTGGTTTAATAGGGGTACAACTTTAA 513 0.3957 MDNILGLLKLRIKSGINIAIRDANSSDPYVVVNMGEQKLRTRVVKNNCNPEWNEELTLSISDVQTPIHLTVFDKDTFSLDDKVGDAEIDLKPYAQAVQMKLDSLPDGCVIKRVQAGRTNCLAEESSCILKDGKIIQEMILRLRNVESGELVVEIEWVDIPGCSGLIGVQL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03969 170 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vifa3g03969 170 CDD C2_ArfGAP 5 148 - -
Vifa3g03969 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Vifa3g03969 170 Gene3D C2 domain 4 161 IPR035892 -
Vifa3g03969 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 162 IPR044562 -
Vifa3g03969 170 SMART C2_3c 7 102 IPR000008 -
Vifa3g03969 170 Pfam C2 domain 7 93 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03969 Vifa-Chr3 1170061282 1170061996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03969 38 165 C2H2 Transcription Factor Family AT1G70790 66.923 1.38e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03969 - - gmx:100788395 273.092