Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03968 ATGGATAATATTCTTGGTCTTCTCAAACTACGTATCAAAAGGGGAATTAATATTGCAATTCGTGATTCTATTTCTAGCGACCCTTATGTTGTTGTCAAAATGGGTGAAGAGTTGCAGAAGCTGAGGACTAGTGTTGTGAAAAACAATTGCAACCCTGTGTGGAATGAAGAACTAACCCTTTCAATAAAGGATGTTCATACTCCAATACATATAACAGTTTTTGACAAAGACACATTCTCTCTCGATGACAAAGTGGGTGATGCAGACATAGACTTGCTACCATATGCTAATGCTGTACAAATGAAGTTGGATACTCTTCCAGATGGTTGTGCAATCAAGACGGTTCAACCAAGTAGGACTAATTGTCTTGCCGAAGAGAGTAGATGTATTTTGAAAGATGGAAAAGTAGTCCAAGAAATGCTTCTAAAATTGAGAAATATTGAGAGTGGTGAATTGGTTGTGGAAATTGAATGGGTGGATATTCCTGGTAGTAGAGGTCTATTAGGGGGACAAAGTTAA 519 0.3776 MDNILGLLKLRIKRGINIAIRDSISSDPYVVVKMGEELQKLRTSVVKNNCNPVWNEELTLSIKDVHTPIHITVFDKDTFSLDDKVGDADIDLLPYANAVQMKLDTLPDGCAIKTVQPSRTNCLAEESRCILKDGKVVQEMLLKLRNIESGELVVEIEWVDIPGSRGLLGGQS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03968 172 Pfam C2 domain 7 93 IPR000008 -
Vifa3g03968 172 CDD C2_ArfGAP 5 150 - -
Vifa3g03968 172 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Vifa3g03968 172 Gene3D C2 domain 3 165 IPR035892 -
Vifa3g03968 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 165 IPR044562 -
Vifa3g03968 172 SMART C2_3c 7 104 IPR000008 -
Vifa3g03968 172 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 159 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03968 Vifa-Chr3 1169884350 1169885410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03968 40 167 C2H2 Transcription Factor Family AT1G70790 61.538 3.02e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03968 - - gmx:100788395 249.21