Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03967 ATGGATAATAATATTCTTGGCCTTCTCAAACTTCGTATCAAAAGAGGAATTGATCTTGCAATTCGTGATGCTAATACCAGCGATCCTTATGTTGTTGTCCAAATGGGTGACCAGAAGCTGAAGACTCGTGTAGTGAAAAACAATTGCAACCCTGAATGGAATGAAGAACTAACCCTTTCAATAAGGGATATTAAAACTCCAATTACGTCTCTTTTTGACAAAGACACATTCTCCATAGATGACAAAATGGGTGATGCCGATGTAGACTTGAAACCATATGCTCAAGCTATGCAAATGAAGTTGGCCACTCTTCCAGATGGATGTGCAATCAAGAGGGTTCAAGCAAATAGGACTAATTGTCTTGCTGAAGAGAGTAGTTGTATTTGGAAAAATGGTAAGATCATTCAACAAATGATTCTAAGATTGAGAAATGTTGAGAGTGGGGAATTGGTTGTTGAAATTGAGTGGGTGGATATTCCTGGTAGCACAGGTATATCAGGGGGGACATAG 510 0.3902 MDNNILGLLKLRIKRGIDLAIRDANTSDPYVVVQMGDQKLKTRVVKNNCNPEWNEELTLSIRDIKTPITSLFDKDTFSIDDKMGDADVDLKPYAQAMQMKLATLPDGCAIKRVQANRTNCLAEESSCIWKNGKIIQQMILRLRNVESGELVVEIEWVDIPGSTGISGGT 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03967 169 Gene3D C2 domain 3 163 IPR035892 -
Vifa3g03967 169 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 162 IPR044562 -
Vifa3g03967 169 Pfam C2 domain 8 96 IPR000008 -
Vifa3g03967 169 CDD C2_ArfGAP 6 148 - -
Vifa3g03967 169 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 91 IPR035892 -
Vifa3g03967 169 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vifa3g03967 169 SMART C2_3c 8 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03967 Vifa-Chr3 1169674986 1169675713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03967 39 166 C2H2 Transcription Factor Family AT1G70790 61.832 5.56e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03967 - - gmx:100788395 271.166