Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03953 ATGACCAAATCCAAAAATTTCTTTCATAATCTCATCAAGCCCTTCAAATTTGCTTCCAACAGAGAGGGAAGGAGCGAAGACGATATACAGAACATAGCTACACAGGAGCGAAGAACATTTTCCTATGAAACATTGGTTGCTGCTACCAACAACTTTCAAGCTATTAACAAACTTGGAGAGGGAGGATTTGGACCTGTCTACAAGGGTAAATTGAATGATGGGAGAGAGATAGCAGTGAAGAAGCTATCGCATGGTTCGAATCAAGGGAAGACACAGTTTGTTGCGGAGGCCAAGTTGTTGACTCGTGTGCAGCACCGTAATGTGGTGAATTTGTTTGGTTATTGTATCCATGGTAGGGAGAAGCTTCTTGTGTATGAGTATGTCCCTCGTGAGAGCCTTGACAAGTTCCTATTCAAATCAAAAAAGAAAGAAGGGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGCAAGAGGTTTACTTTATCTTCATGAAGACTCTCACAACTGCATAATCCATCGTGACATAAAAGCAGCCAACATTTTACTTGATGAAAAATGGGTCCCTAAGATTGCTGACTTTGGCTTGGCTCGTCTCTTTCCAGAAGATGAAACTCATGTCAATACACGTGTGGCTGGAACACATGGATACATGGCTCCAGAGTATTTGATGCATGGACACTTATCTGTGAAGGCAGATGTGTATAGCTATGGAGTTTTGGTGTTGGAGTTGATTACTGGCCATCGAAACTCATCCTCTGACCCTGCCTTCAACGGAGACAATCTCCTTAATTGGGCATACAAGTTATACAAGAAAGGGAGGTGGTTAGAAATGGTAGACCCCACAGTGGCATCTTCAGTGGAGATAACAGAACAAGTGGAAGTGTGTATTCGAGTGAGTCTATTGTGCACACAAGGAGATCCACAACTTCGTCCAACGATGGCGCGTGTGGTATTGATGTTGTCTAAGAAGCCGCCAAGTCACATGGAAGAGCCAACAAGACCGGGTATACCTGGTTCTAGATACAGAAGAACAGTGCCTCGCAGTCACACCTCTTTTACTACCGATGATGAGAATGACTCCTCTGCTTCACACGTTGATTCAAGCAATTATGATACTACTATGGCTACTATTACGGCTACCAGTTCTACTTCTGCAACAAGAACAAGAACGAGCTCTGCCACTGCACAAGCAGATTTGCGTGGGAAACGTCCAATGCTATCTTCATGA 1236 0.4345 MTKSKNFFHNLIKPFKFASNREGRSEDDIQNIATQERRTFSYETLVAATNNFQAINKLGEGGFGPVYKGKLNDGREIAVKKLSHGSNQGKTQFVAEAKLLTRVQHRNVVNLFGYCIHGREKLLVYEYVPRESLDKFLFKSKKKEGLDWKRRFDIINGVARGLLYLHEDSHNCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELITGHRNSSSDPAFNGDNLLNWAYKLYKKGRWLEMVDPTVASSVEITEQVEVCIRVSLLCTQGDPQLRPTMARVVLMLSKKPPSHMEEPTRPGIPGSRYRRTVPRSHTSFTTDDENDSSASHVDSSNYDTTMATITATSSTSATRTRTSSATAQADLRGKRPMLSS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03953 411 CDD STKc_IRAK 58 325 - -
Vifa3g03953 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vifa3g03953 411 MobiDBLite consensus disorder prediction 366 400 - -
Vifa3g03953 411 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Vifa3g03953 411 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 377 - -
Vifa3g03953 411 Pfam Protein tyrosine and serine/threonine kinase 54 321 IPR001245 GO:0004672|GO:0006468
Vifa3g03953 411 Gene3D Phosphorylase Kinase; domain 1 15 127 - -
Vifa3g03953 411 SUPERFAMILY Protein kinase-like (PK-like) 36 350 IPR011009 -
Vifa3g03953 411 SMART serkin_6 52 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03953 411 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Vifa3g03953 411 FunFam Cysteine-rich receptor-like protein kinase 2 128 331 - -
Vifa3g03953 411 ProSiteProfiles Protein kinase domain profile. 52 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03953 411 MobiDBLite consensus disorder prediction 326 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03953 Vifa-Chr3 1167347988 1167356192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03953 32 339 Receptor kinase-like Gene Family AT4G11530 50.968 3.36e-107 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa3g03953 PK_Tyr_Ser-Thr 3.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03953 - - mtr:11421623 711.064