Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03921 ATGTCTTCACAAACACCAACCTCCGAAACGCAAGAGCCACAAGCGCCGCTCCTCCGTTCACGCCATGAAGGTGGACGCTCCACATCCCTCGCGGTTCTTCTAGGACGCGCCGCCGGACGGAGAGGACCGTCGGTTCTCGTACGAGAGACAGCGGCGCGTGAACTCGAAGAGCGTCGTGCTGACTGGGGATATTCGAAGCCGGTGGTAGCGCTTGATATATCGTGGAACATGGCGTTCGTTGTGGTTTCGGCGGTGATGTTGTTTTGCACCGTTGACGAGAATCCGATCACGCCGATCCGAATTTGGATCATCGGGTACGCGCTGCAGTGTTTCGTACACGTCGTGCTGGTGTGGCTTGAGTACCACCGCCGTAGTAGGAGAGATTCGAGACGATGGCAGAGAGAGAACGACGGTGGAGCCAGTTCCGACGGAAGCGACAGTGATGACGGTGACGGTAACTCATCTCAGTCCAGGTTCACCAAGCGATGTGAATCAATAAATACTGGGGTTTCATTCATTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATCCTTCTGGAAAATGCTCCAAGCTTGTACTGGTTGGCTGTTATCTTTCTAGCATTTGATGTCTTCTTTGCGATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTCTGCCCTGCATCATTGCAATTCTCTATGCTGTTGCAGGACAGGCAGGTGCGTCCGAAGCAGACCTTAGTATACTTTCAAAATACAGATTTCGATTATTAAACAACGAGGAGAAGGCTAGCGGTGGAGCTGGATCGATGGTTCCCACAGAAACCTCCAGTGGATACTTGGCTAATGAACGGATACTTTTACCCGAGGATGCAGAATGTTGTATATGCCTCTGTCCATACGAGGATGGAGTGGAGCTTCATACTCTTCCATGCAACCATCACTTCCACTCTTCATGCATTGTAAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGTAAGTATAATATTCTCAAGGGAAACGAACAGGTATAA 1047 0.4967 MSSQTPTSETQEPQAPLLRSRHEGGRSTSLAVLLGRAAGRRGPSVLVRETAARELEERRADWGYSKPVVALDISWNMAFVVVSAVMLFCTVDENPITPIRIWIIGYALQCFVHVVLVWLEYHRRSRRDSRRWQRENDGGASSDGSDSDDGDGNSSQSRFTKRCESINTGVSFIWWMVGFYWVVSGGDILLENAPSLYWLAVIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQAGASEADLSILSKYRFRLLNNEEKASGGAGSMVPTETSSGYLANERILLPEDAECCICLCPYEDGVELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03921 348 MobiDBLite consensus disorder prediction 1 15 - -
Vifa3g03921 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 343 IPR013083 -
Vifa3g03921 348 Pfam Ring finger domain 296 338 IPR001841 -
Vifa3g03921 348 PANTHER TARGET OF ERK KINASE MPK-1 37 346 - -
Vifa3g03921 348 MobiDBLite consensus disorder prediction 132 158 - -
Vifa3g03921 348 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Vifa3g03921 348 CDD RING-H2_PA-TM-RING 296 338 - -
Vifa3g03921 348 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g03921 348 SUPERFAMILY RING/U-box 285 342 - -
Vifa3g03921 348 SMART ring_2 297 337 IPR001841 -
Vifa3g03921 348 FunFam E3 ubiquitin protein ligase RIE1 277 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03921 Vifa-Chr3 1159071000 1159077784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03921 2 347 C3H Transcription Factor Family AT1G68070 67.435 7.97e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03921 - K13148 aip:107643865 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03921 3 1159071000 1159077784 Vifa3g03921 3 1159071000 1159077784 ECH