Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03917 ATGGCAGAACGCGGAGGAGCAGCGCCAGCAGGTGATCGTGGCGGTTTTGGAAGAGGATTCGGAGGAAGAGGAGGCGGAAGAGGAGGAGATAGAGGCAGGGGCCGCCGCAGATCCGGAGGCCGTCGTGAAGAAGAAGAGAAATGGGTTCCCGTGACGAAACTCGGGCGGCTGGTGAAAGAAGGGAAAATCCGCAGCCTTGAGCAAATCTATCTCCACTCTCTCCCCATCAAGGAGCACCAAATCATCGACACGCTAGTCGGTCCAACTCTGAAAGACGAAGTGATGAAGATCATGCCGGTTCAGAAGCAAACCAGAGCCGGTCAGCGAACCCGGTTCAAGGCCTTTGTGGTCGTTGGTGATAACAATGGTCACGTTGGGCTTGGGGTGAAGTGTAGTAAGGAGGTTGCTACTGCGATTCGTGGTGCGATTATTCTTGCGAAGCTTTCCGTGATTCCCGTGAGGAGAGGGATGGTTCCGGCTCCTCGTGGTTCCGGGATTGTCGCTGCTAGGGTTCCTAAGAAGGTCTTGCAGTTTGCTGGGATTGATGATGTTTTTACTTCCTCTAGGGGATCTACCAAAACCCTTGGAAATTTCGTCAAGGCTACATTTGACTGTCTGCTCAAAACCTATGGTTTCCTGACACCTGAATTCTGGAAGGAGACTCGCTTCAGTAAATCTCCATTCCAAGAATACACAGATCTATTGGCCAAGCCAACAGGAAAGACCTTGATCTTGGAGGAAGAGAGGGTTGAAGCCTGA 759 0.5204 MAERGGAAPAGDRGGFGRGFGGRGGGRGGDRGRGRRRSGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTGKTLILEEERVEA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03917 252 MobiDBLite consensus disorder prediction 28 46 - -
Vifa3g03917 252 Gene3D - 47 149 - -
Vifa3g03917 252 PANTHER RIBOSOMAL S SUBUNIT 41 210 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vifa3g03917 252 SUPERFAMILY dsRNA-binding domain-like 86 155 - -
Vifa3g03917 252 FunFam 40S ribosomal protein S2 131 220 - -
Vifa3g03917 252 MobiDBLite consensus disorder prediction 1 46 - -
Vifa3g03917 252 Pfam Ribosomal protein S5, C-terminal domain 157 220 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vifa3g03917 252 FunFam 40S ribosomal protein S2 47 152 - -
Vifa3g03917 252 Pfam Ribosomal protein S5, N-terminal domain 90 154 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vifa3g03917 252 ProSitePatterns Ribosomal protein S5 signature. 107 139 IPR018192 -
Vifa3g03917 252 Gene3D - 150 220 IPR014721 -
Vifa3g03917 252 SUPERFAMILY Ribosomal protein S5 domain 2-like 155 220 IPR020568 -
Vifa3g03917 252 ProSiteProfiles S5 double stranded RNA-binding domain profile. 90 153 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03917 Vifa-Chr3 1158335006 1158336724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03917 44 240 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 80.269 6.83e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03917 K02981 - gmx:100797105 407.527