Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03907 ATGAGAACCTTAAGAAGCTTCGATGGCTTCCCTTTAAATTTGAGCAACTTCTATGGTGGCTGCGCTATTCTTCTTCTTCTTCTTGTTGTTGTTACTTTATTGTTTCTTCTGAACCGTAAGAGCAGATCCCTGTTGGCGTCCTCTTTGATCTCCGATTCTAGCAATTTAAACCCAAGGGTTTACAATTGCAGAACCTCAAACACTGTCACTGATGCTGATTTGAAGTTTTTAATGGATGAAATTCTAAATCAGAACCATAAATGGGAGGATGTCATAGATAAAACAAATCATCATCTATGCTACAAAGCTAAATCCACCAAACCTAAGAATGGTCCCCTGAAATATTGGAGTATGACTCTGCAGCTGGATGAATCTGATGGTTCTGAAGTTGGTCGTACAGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATCGTGAAGAGCGTAGGTGAAGGTGTGACTCATCTGAAACCAGGGGATAAAGCCCTGCCTGTATTCACAGGGGAGTGTGGTGAATGTCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGATAACAAGTCTAGATTCTCTATCAATGGAGAGCCCATAAACCATTTCGTGGGCACCTCTACATTCAGTGAGTACACAGTGGTTCATGCTGGATGTGTTGTAAAGATCAATCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGTTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGGAAGTAGATTAA 978 0.4243 MRTLRSFDGFPLNLSNFYGGCAILLLLLVVVTLLFLLNRKSRSLLASSLISDSSNLNPRVYNCRTSNTVTDADLKFLMDEILNQNHKWEDVIDKTNHHLCYKAKSTKPKNGPLKYWSMTLQLDESDGSEVGRTGQTPLFPRIFGHEAGGIVKSVGEGVTHLKPGDKALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGEPINHFVGTSTFSEYTVVHAGCVVKINPEAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGVVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPEVD 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03907 325 FunFam alcohol dehydrogenase 1-like isoform X1 102 257 - -
Vifa3g03907 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 244 322 IPR036291 -
Vifa3g03907 325 FunFam S-(hydroxymethyl)glutathione dehydrogenase 258 325 - -
Vifa3g03907 325 Gene3D - 130 257 - -
Vifa3g03907 325 Pfam Alcohol dehydrogenase GroES-like domain 137 239 IPR013154 -
Vifa3g03907 325 PANTHER ALCOHOL DEHYDROGENASE 108 323 - -
Vifa3g03907 325 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 144 158 IPR002328 GO:0008270|GO:0016491
Vifa3g03907 325 Gene3D - 258 323 - -
Vifa3g03907 325 SUPERFAMILY GroES-like 135 262 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03907 Vifa-Chr3 1154108809 1154110550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03907 139 320 Monolignol Biosynthesis Gene Families AT1G72680 27.322 8.21e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03907 K18857 - gmx:100801918 353.214